myRT

myRT report for GCA_001404355.1_13470_2_74

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Seq: CYZV01000091.1 Clostridium disporicum strain 2789STDY5834855 genome assembly, contig: SCcontig000091, whole genome shotgun sequence (2938 bp)
Overview 1 RT 1: 209-2660 bp Neighborhood of RT #1 [209, 2734] RVT-GII RVT-GII GIIM Feature: gene Location: 209-976 bp Ori: CUO92233.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461 -968 bp Feature: gene Location: 1490-2734 bp Ori: CUO92274.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1691-2348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 691 -2348 bp Feature: domain Description: GIIM Note: maturase Location: 2429-2660 bp Feature: domain Description: GIIM Note: maturase Location: 2429-2660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CYZV01000010.1 Clostridium disporicum strain 2789STDY5834855 genome assembly, contig: SCcontig000010, whole genome shotgun sequence (95596 bp)
Overview 1 RT 1: 2309-4962 bp Neighborhood of RT #1 [2309, 4988] PBP2_TMBP_like UgpB RVT-GII GIIM LplB Feature: gene Location: 2309-2503 bp Ori: CUN96385.1 Feature: domain Description: PBP2_TMBP_like Location: 2318-2489 bp Feature: domain Description: PBP2 _TMBP_like Location: 2 318-2 489 bp Feature: gene Location: 2564-2782 bp Ori: CUN96420.1 Feature: domain Description: UgpB Location: 2570-2735 bp Feature: domain Description: UgpB Location: 2 570-2 735 bp Feature: gene Location: 2992-3294 bp Ori: CUN96456.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3100-3286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3100-32 86 bp Feature: gene Location: 3332-3475 bp Ori: CUN96489.1 Feature: domain Description: GIIM Note: maturase Location: 3335-3473 bp Feature: domain Description: GIIM Note: maturase Location: 3335-3473 bp Feature: gene Location: 3996-4988 bp Ori: CUN96519.1 Gene: malF Feature: domain Description: LplB Location: 4086-4962 bp Feature: domain Description: LplB Location: 4086-4962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_TMBP_like (cd13585), UgpB (COG1653), RVT-GII, GIIM (pfam08388), LplB (COG4209)

Seq: CYZV01000012.1 Clostridium disporicum strain 2789STDY5834855 genome assembly, contig: SCcontig000012, whole genome shotgun sequence (91358 bp)
Overview 1 RT 1: 69934-78476 bp Neighborhood of RT #1 [69934, 79108] NucS PLDc_N_DEXD_b3 SSL2 RVT-UG24 HDc DUF2357 PDDEXK_7 Feature: gene Location: 69934-71013 bp Ori: CUO07094.1 Feature: domain Description: NucS Location: 69979-70207 bp Feature: domain Description: NucS Location: 69979-70207 bp Feature: gene Location: 71110-73596 bp Ori: CUO07124.1 Gene: rhlE_2 Feature: domain Description: PLDc_N_DEXD_b3 Location: 71212-71635 bp Feature: domain Description: PLDc_N_DEXD_b3 Location: 71212-7163 5 bp Feature: domain Description: SSL2 Location: 71725-73111 bp Feature: domain Description: SSL2 Location: 71725-73 111 bp Feature: gene Location: 73636-76929 bp Ori: CUO07165.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 74164-74617 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 74164-74617 bp Feature: domain Description: HDc Location: 75865-76138 bp Feature: domain Description: HDc Location: 75865-7613 8 bp Feature: gene Location: 76943-77497 bp Feature: gene Location: 77588-79108 bp Ori: CUO07221.1 Feature: domain Description: DUF2357 Location: 77600-77948 bp Feature: domain Description: DUF23 57 Location: 77600-77948 bp Feature: domain Description: PDDEXK_7 Location: 78020-78476 bp Feature: domain Description: PDDEXK_7 Location: 78020-78476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NucS (pfam01939), PLDc_N_DEXD_b3 (cd09205), SSL2 (COG1061), RVT-UG24, HDc (smart00471), DUF2357 (pfam09823), PDDEXK_7 (pfam04411)

Seq: CYZV01000042.1 Clostridium disporicum strain 2789STDY5834855 genome assembly, contig: SCcontig000042, whole genome shotgun sequence (29455 bp)
Overview 1 RT 1: 25335-28610 bp Neighborhood of RT #1 [25335, 28723] ECF_trnsprt UbiE RVT-GII HNHc Feature: gene Location: 25335-25865 bp Ori: CUO71224.1 Feature: domain Description: ECF_trnsprt Location: 25353-25815 bp Feature: domain Description: ECF_trnsprt Location: 25353-25815 bp Feature: gene Location: 25858-26196 bp Ori: CUO71248.1 Gene: ubiE_2 Feature: domain Description: UbiE Location: 25870-26140 bp Feature: domain Description: UbiE Location: 25870-2614 0 bp Feature: gene Location: 26882-28723 bp Ori: CUO71277.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27200-27920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27200-27920 bp Feature: domain Description: HNHc Note: nucleases Location: 28445-28610 bp Feature: domain Description: HNHc Note: nucleases Location: 284 4 5-28610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ECF_trnsprt (pfam12822), UbiE (COG2226), RVT-GII, HNHc (smart00507)

Seq: CYZV01000013.1 Clostridium disporicum strain 2789STDY5834855 genome assembly, contig: SCcontig000013, whole genome shotgun sequence (86729 bp)
Overview 1 RT 1: 12282-16221 bp Neighborhood of RT #1 [12282, 16256] MutT_pyrophosphohydrolase RVT-GII GIIM cyano_FeS_chp Feature: gene Location: 12282-12656 bp Ori: CUO08493.1 Feature: domain Description: MutT_pyrophosphohydrolase Location: 12303-12642 bp Feature: domain Description: MutT_pyrophosphohydrolase Location: 12303-12642 bp Feature: gene Location: 12706-12930 bp Feature: gene Location: 13406-14383 bp Ori: CUO08545.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13751-14369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1375 1-14369 bp Feature: gene Location: 14421-14762 bp Ori: CUO08584.1 Feature: domain Description: GIIM Note: maturase Location: 14424-14607 bp Feature: domain Description: GIIM Note: maturase Location: 14424-14607 bp Feature: gene Location: 14919-16256 bp Ori: CUO08613.1 Feature: domain Description: cyano_FeS_chp Location: 14934-16221 bp Feature: domain Description: cyano_FeS_chp Location: 14934-16221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MutT_pyrophosphohydrolase (cd03425), RVT-GII, GIIM (pfam08388), cyano_FeS_chp (TIGR03279)