myRT

myRT report for GCA_001404395.1_14207_7_24

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Seq: CZAR01000001.1 Parabacteroides distasonis strain 2789STDY5834901 genome assembly, contig: SCcontig000001, whole genome shotgun sequence (405213 bp)
Overview 1 RT 1: 147858-155371 bp Neighborhood of RT #1 [147858, 155583] COG2865 RVT-GII Intron_maturas2 HNHc YWFCY Relaxase Relaxase Feature: gene Location: 147858-149306 bp Feature: domain Description: COG2865 Location: 147885-149256 bp Feature: domain Description: COG2865 Location: 1 47885-1 49256 bp Feature: gene Location: 149309-149761 bp Feature: gene Location: 150788-152662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151112-151934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 1 1 2-1 51 934 bp Feature: domain Description: Intron_maturas2 Location: 152045-152312 bp Feature: domain Description: Intron_maturas2 Location: 1 52045-1 5231 2 bp Feature: domain Description: HNHc Note: nucleases Location: 152483-152633 bp Feature: domain Description: HNHc Note: nucleases Location: 1 52483-1 52633 bp Feature: gene Location: 153131-154294 bp Feature: domain Description: YWFCY Location: 153137-153314 bp Feature: domain Description: YWFCY Location: 1 531 37-1 5331 4 bp Feature: gene Location: 154330-155583 bp Feature: domain Description: Relaxase Location: 154492-154852 bp Feature: domain Description: Relaxase Location: 1 54492-1 54852 bp Feature: domain Description: Relaxase Location: 155080-155371 bp Feature: domain Description: Relaxase Location: 1 55080-1 55371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), Relaxase (pfam03432)

Seq: CZAR01000031.1 Parabacteroides distasonis strain 2789STDY5834901 genome assembly, contig: SCcontig000031, whole genome shotgun sequence (53769 bp)
Overview 1 RT 1: 219-4708 bp Neighborhood of RT #1 [219, 4710] RVT-GII Intron_maturas2 HNHc DUF4120 Feature: gene Location: 219-692 bp Feature: gene Location: 726-2531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 990-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 990-1812 bp Feature: domain Description: Intron_maturas2 Location: 1890-2211 bp Feature: domain Description: Intron_maturas2 Location: 1890-2 2 11 bp Feature: domain Description: HNHc Note: nucleases Location: 2364-2508 bp Feature: domain Description: HNHc Note: nucleases Location: 2 364-2 508 bp Feature: gene Location: 3910-4401 bp Feature: gene Location: 4420-4710 bp Feature: domain Description: DUF4120 Location: 4426-4708 bp Feature: domain Description: DUF412 0 Location: 442 6-4708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4120 (pfam13496), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CZAR01000036.1 Parabacteroides distasonis strain 2789STDY5834901 genome assembly, contig: SCcontig000036, whole genome shotgun sequence (35789 bp)
Overview 1 RT 1: 17222-23671 bp Neighborhood of RT #1 [17222, 23679] dnaG dnaG TraO RVT-GII Intron_maturas2 Bac_Flav_CT_N Bac_Flav_CT_N Bac_Flav_CT_M Feature: gene Location: 17222-18121 bp Feature: domain Description: dnaG Location: 17300-17519 bp Feature: domain Description: dnaG Location: 173 00-17519 bp Feature: domain Description: dnaG Location: 17810-18092 bp Feature: domain Description: dnaG Location: 17810-18092 bp Feature: gene Location: 18130-18705 bp Feature: domain Description: TraO Location: 18205-18700 bp Feature: domain Description: TraO Location: 18205-18700 bp Feature: gene Location: 19405-21216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19669-20491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19669-20491 bp Feature: domain Description: Intron_maturas2 Location: 20560-20869 bp Feature: domain Description: Intron_maturas2 Location: 20560-20869 bp Feature: gene Location: 21757-22254 bp Feature: domain Description: Bac_Flav_CT_N Location: 21760-21835 bp Feature: domain Description: Bac_Flav_CT_N Location: 21760-2183 5 bp Feature: domain Description: Bac_Flav_CT_N Location: 21970-22234 bp Feature: domain Description: Bac_Flav_CT_N Location: 21970-2223 4 bp Feature: gene Location: 22324-23679 bp Feature: domain Description: Bac_Flav_CT_M Location: 22423-23671 bp Feature: domain Description: Bac_Flav_CT_M Location: 22423 -23 671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), TraO (pfam10626), RVT-GII, Intron_maturas2 (pfam01348), Bac_Flav_CT_N (TIGR03780), Bac_Flav_CT_M (TIGR03779)

Seq: CZAR01000019.1 Parabacteroides distasonis strain 2789STDY5834901 genome assembly, contig: SCcontig000019, whole genome shotgun sequence (125976 bp)
Overview 1 RT 1: 643-6418 bp Neighborhood of RT #1 [643, 6900] RVT_N RVT-GII GIIM KAP_NTPase Feature: gene Location: 643-2295 bp Feature: RT Description: RVT_N Location: 697-940 bp Feature: RT Description: RVT_N Location: 697-94 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1633 bp Feature: domain Description: GIIM Note: maturase Location: 1687-1918 bp Feature: domain Description: GIIM Note: maturase Location: 1687-1918 bp Feature: gene Location: 3646-6078 bp Feature: gene Location: 6100-6900 bp Feature: domain Description: KAP_NTPase Location: 6238-6418 bp Feature: domain Description: KAP_NTPase Location: 6238-64 18 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CZAR01000006.1 Parabacteroides distasonis strain 2789STDY5834901 genome assembly, contig: SCcontig000006, whole genome shotgun sequence (266144 bp)
Overview 1 RT 1: 118697-124944 bp Neighborhood of RT #1 [118697, 125069] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 118697-119023 bp Feature: domain Description: DUF4134 Location: 118718-119009 bp Feature: domain Description: DUF4134 Location: 118718-119009 bp Feature: gene Location: 119122-119376 bp Feature: domain Description: DUF4134 Location: 119158-119359 bp Feature: domain Description: DUF4134 Location: 11915 8-11935 9 bp Feature: gene Location: 119918-121729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120182-121004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120182-121004 bp Feature: domain Description: Intron_maturas2 Location: 121193-121403 bp Feature: domain Description: Intron_maturas2 Location: 121193-121403 bp Feature: domain Description: HNHc Note: nucleases Location: 121553-121658 bp Feature: domain Description: HNHc Note: nucleases Location: 1215 5 3-12165 8 bp Feature: gene Location: 121961-122257 bp Feature: domain Description: DUF4133 Location: 122003-122180 bp Feature: domain Description: DUF4133 Location: 122003-122180 bp Feature: gene Location: 122301-125069 bp Feature: domain Description: Bac_Flav_CT_G Location: 122511-124017 bp Feature: domain Description: Bac_Flav_CT_G Location: 1225 11-124017 bp Feature: domain Description: Bac_Flav_CT_G Location: 124122-124944 bp Feature: domain Description: Bac_Flav_CT_G Location: 124122-124944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783)