myRT

myRT report for GCA_001404475.1_13414_6_24

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Seq: CYZH01000011.1 Bacteroides finegoldii strain 2789STDY5608840 genome assembly, contig: SCcontig000011, whole genome shotgun sequence (143649 bp)
Overview 1 RT 1: 51247-56361 bp Neighborhood of RT #1 [51247, 56381] RVT-Retrons VapI Feature: gene Location: 51247-51600 bp Feature: gene Location: 51613-53187 bp Feature: gene Location: 54172-54807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54328-54772 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54328-54772 bp Feature: gene Location: 55169-55309 bp Feature: gene Location: 56037-56381 bp Feature: domain Description: VapI Location: 56094-56361 bp Feature: domain Description: VapI Location: 56094-56361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, VapI (COG3093)

Seq: CYZH01000005.1 Bacteroides finegoldii strain 2789STDY5608840 genome assembly, contig: SCcontig000005, whole genome shotgun sequence (284070 bp)
Overview 1 RT 1: 230923-235748 bp Neighborhood of RT #1 [230923, 239869] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 230923-231165 bp Feature: gene Location: 231345-231830 bp Feature: gene Location: 231827-233131 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 232037-232715 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 32 037-2 32 715 bp Feature: gene Location: 233457-233651 bp Feature: gene Location: 233648-239869 bp Feature: domain Description: Laminin_G_3 Location: 234593-234671 bp Feature: domain Description: Laminin_G_3 Location: 2 34593-2 34671 bp Feature: domain Description: Laminin_G_3 Location: 235322-235748 bp Feature: domain Description: Laminin_G_3 Location: 2 3532 2 -2 35748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: CYZH01000003.1 Bacteroides finegoldii strain 2789STDY5608840 genome assembly, contig: SCcontig000003, whole genome shotgun sequence (322771 bp)
Overview 1 RT 1: 22955-37082 bp Neighborhood of RT #1 [22955, 37084] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons GlnA3 Feature: gene Location: 22955-24757 bp Feature: domain Description: rpsA Location: 23024-24641 bp Feature: domain Description: rpsA Location: 23 024-24641 bp Feature: gene Location: 24854-30811 bp Feature: domain Description: DUF4011 Location: 26084-26597 bp Feature: domain Description: DUF4011 Location: 26084-26597 bp Feature: domain Description: DEXXQc_SF1 Location: 26936-27557 bp Feature: domain Description: DEXXQc_SF1 Location: 2693 6-27557 bp Feature: domain Description: DEXXQc_SF1 Location: 28364-29123 bp Feature: domain Description: DEXXQc_SF1 Location: 283 64-29123 bp Feature: domain Description: TIGR00376 Location: 29252-29642 bp Feature: domain Description: TIGR003 76 Location: 29252-29642 bp Feature: domain Description: MTES_1575 Location: 29795-30080 bp Feature: domain Description: MTES_1575 Location: 29795-3 0080 bp Feature: domain Description: DUF3320 Location: 30320-30461 bp Feature: domain Description: DUF3 3 20 Location: 3 03 20-3 0461 bp Feature: gene Location: 30813-31943 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31134-31677 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 113 4-3 1677 bp Feature: gene Location: 32149-34356 bp Feature: gene Location: 34895-37084 bp Feature: domain Description: GlnA3 Location: 34967-37082 bp Feature: domain Description: GlnA3 Location: 3 4967-3 7082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, GlnA3 (COG3968)

Seq: CYZH01000020.1 Bacteroides finegoldii strain 2789STDY5608840 genome assembly, contig: SCcontig000020, whole genome shotgun sequence (75353 bp)
Overview 1 RT 1: 41102-48102 bp Neighborhood of RT #1 [41102, 48137] PurR XTALbg XTALbg RVT_N RVT-GII FKBP_C PRK04173 Feature: gene Location: 41102-42235 bp Feature: domain Description: PurR Location: 41216-42200 bp Feature: domain Description: PurR Location: 4 1216-4 2200 bp Feature: gene Location: 42855-43580 bp Feature: domain Description: XTALbg Location: 43161-43356 bp Feature: domain Description: XTALbg Location: 4 3161-4 3356 bp Feature: domain Description: XTALbg Location: 43404-43473 bp Feature: domain Description: XTALbg Location: 4 34 04 -4 34 73 bp Feature: gene Location: 44275-45042 bp Feature: RT Description: RVT_N Location: 44332-44575 bp Feature: RT Description: RVT_N Location: 4 4 332-4 4 575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44620-45037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 620-4 5037 bp Feature: gene Location: 45982-46584 bp Feature: domain Description: FKBP_C Location: 46249-46567 bp Feature: domain Description: FKBP_C Location: 4 624 9-4 6567 bp Feature: gene Location: 46596-48137 bp Feature: domain Description: PRK04173 Location: 46611-48102 bp Feature: domain Description: PRK04 173 Location: 4 6611-4 8102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PurR (COG1609), XTALbg (smart00247), RVT_N (pfam13655), RVT-GII, FKBP_C (pfam00254), PRK04173 (glycyl-tRNA synthetase; Provisional)