myRT

myRT report for GCA_001404515.1_L.albaCECT5095_Spades_Prokka

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Seq: CXWE01000001.1 Labrenzia alba genome assembly L.albaCECT5095_Spades_Prokka, scaffold 0001, whole genome shotgun sequence (1198566 bp)
Overview 1 RT 1: 16203-20183 bp Neighborhood of RT #1 [16203, 20347] Arm-DNA-bind_3 RVT-GII HTH_32 Feature: gene Location: 16203-16799 bp Ori: CTQ63682.1 Gene: intS Feature: domain Description: Arm-DNA-bind_3 Location: 16224-16482 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 6224-1 6482 bp Feature: gene Location: 17244-17627 bp Feature: gene Location: 17946-19253 bp Ori: CTQ63690.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18246-18966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8246-1 8966 bp Feature: gene Location: 19436-19612 bp Feature: gene Location: 19856-20347 bp Ori: CTQ63695.1 Feature: domain Description: HTH_32 Location: 19961-20183 bp Feature: domain Description: HTH_32 Location: 1 9961 -201 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-GII, HTH_32 (pfam13565)

Seq: CXWE01000005.1 Labrenzia alba genome assembly L.albaCECT5095_Spades_Prokka, scaffold 0005, whole genome shotgun sequence (623386 bp)
Overview 1 RT 1: 481425-488694 bp Neighborhood of RT #1 [481425, 488753] PRK05298 SLATT_5 RVT-UG13 VOC_like MFS_MefA_like Feature: gene Location: 481425-484571 bp Ori: CTQ77038.1 Gene: uvrB Feature: domain Description: PRK05298 Location: 482241-484209 bp Feature: domain Description: PRK052 98 Location: 482 2 41-4842 09 bp Feature: gene Location: 484578-485168 bp Ori: CTQ77041.1 Feature: domain Description: SLATT_5 Location: 484593-485145 bp Feature: domain Description: SLATT_5 Location: 484593-485145 bp Feature: gene Location: 485168-486598 bp Ori: CTQ77044.1 Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 485594-486086 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 485594-486086 bp Feature: gene Location: 487141-487515 bp Ori: CTQ77047.1 Feature: domain Description: VOC_like Location: 487171-487504 bp Feature: domain Description: VOC_like Location: 487171-487504 bp Feature: gene Location: 487542-488753 bp Ori: CTQ77049.1 Feature: domain Description: MFS_MefA_like Location: 487587-488694 bp Feature: domain Description: MFS_MefA_like Location: 487587-488694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05298 (excinuclease ABC subunit UvrB), SLATT_5 (pfam18160), RVT-UG13, VOC_like (cd16355), MFS_MefA_like (cd06173)