myRT

myRT report for GCA_001404875.1_14207_7_37

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Seq: CZAY01000005.1 Dorea longicatena strain 2789STDY5834914 genome assembly, contig: SCcontig000005, whole genome shotgun sequence (175725 bp)
Overview 1 RT 1: 22257-28069 bp Neighborhood of RT #1 [22257, 28069] RVT-GII GIIM RVT-GII Glug Glug Glug Glug Feature: gene Location: 22257-23189 bp Feature: gene Location: 23384-23695 bp Feature: gene Location: 23856-24791 bp Ori: CUP26423.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23862-24426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23862-24426 bp Feature: domain Description: GIIM Note: maturase Location: 24510-24732 bp Feature: domain Description: GIIM Note: maturase Location: 2451 0-24732 bp Feature: gene Location: 24792-25145 bp Ori: CUP26471.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25083-25143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25083-251 43 bp Feature: gene Location: 25558-27444 bp Ori: CUP26519.1 Feature: domain Description: Glug Location: 26110-26167 bp Feature: domain Description: Glug Location: 261 1 0-261 67 bp Feature: domain Description: Glug Location: 26191-26254 bp Feature: domain Description: Glug Location: 261 91 -26254 bp Feature: domain Description: Glug Location: 26275-26341 bp Feature: domain Description: Glug Location: 26275-26341 bp Feature: domain Description: Glug Location: 26365-26437 bp Feature: domain Description: Glug Location: 26365-26437 bp Feature: gene Location: 27797-28069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Glug (pfam07581)

Seq: CZAY01000011.1 Dorea longicatena strain 2789STDY5834914 genome assembly, contig: SCcontig000011, whole genome shotgun sequence (121269 bp)
Overview 1 RT 1: 39581-47680 bp Neighborhood of RT #1 [39581, 48864] RVT-UG24 AAA_15 TOPRIM_OLD UvrD Feature: gene Location: 39581-40453 bp Feature: gene Location: 40478-41005 bp Feature: gene Location: 41002-44574 bp Ori: CUP65977.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 41548-42052 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 41548-42 052 bp Feature: gene Location: 44774-46918 bp Ori: CUP66022.1 Feature: domain Description: AAA_15 Location: 44777-46028 bp Feature: domain Description: AAA_15 Location: 44777-4602 8 bp Feature: domain Description: TOPRIM_OLD Location: 46217-46454 bp Feature: domain Description: TOPRIM_OLD Location: 462 17-46454 bp Feature: gene Location: 46903-48864 bp Ori: CUP66058.1 Gene: pcrA_2 Feature: domain Description: UvrD Location: 46939-47680 bp Feature: domain Description: UvrD Location: 46939-47680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG24, AAA_15 (pfam13175), TOPRIM_OLD (cd01026), UvrD (COG0210)

Seq: CZAY01000038.1 Dorea longicatena strain 2789STDY5834914 genome assembly, contig: SCcontig000038, whole genome shotgun sequence (4260 bp)
Overview 1 RT 1: 988-3625 bp Neighborhood of RT #1 [988, 3798] His_Phos_1 LuxS RVT-GII GIIM Feature: gene Location: 988-1626 bp Ori: CUQ25228.1 Gene: cobC Feature: domain Description: His_Phos_1 Location: 997-1585 bp Feature: domain Description: His_Phos_1 Location: 997-1585 bp Feature: gene Location: 1799-2278 bp Ori: CUQ25255.1 Gene: luxS Feature: domain Description: LuxS Location: 1808-2252 bp Feature: domain Description: LuxS Location: 1808-2252 bp Feature: gene Location: 2404-3798 bp Ori: CUQ25285.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2722-3346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2722-3 3 46 bp Feature: domain Description: GIIM Note: maturase Location: 3403-3625 bp Feature: domain Description: GIIM Note: maturase Location: 3 403 -3 625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT His_Phos_1 (pfam00300), LuxS (pfam02664), RVT-GII, GIIM (pfam08388)