myRT

myRT report for GCA_001405095.1_13470_2_65

Download annotations/find similar RTs

Seq: CZAE01000006.1 Bacteroides thetaiotaomicron strain 2789STDY5834846 genome assembly, contig: SCcontig000006, whole genome shotgun sequence (255545 bp)
Overview 1 RT 1: 204-7584 bp Neighborhood of RT #1 [204, 7748] STN OMP_RagA_SusC RVT-GII Intron_maturas2 OMP_RagA_SusC SusD Feature: gene Location: 204-1253 bp Ori: CUO99229.1 Feature: domain Description: STN Location: 279-366 bp Feature: domain Description: STN Location: 279-366 bp Feature: domain Description: OMP_RagA_SusC Location: 540-1212 bp Feature: domain Description: OMP_RagA_SusC Location: 540-1 21 2 bp Feature: gene Location: 1770-3581 bp Ori: CUO99274.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2034-2856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2034-2856 bp Feature: domain Description: Intron_maturas2 Location: 2931-3234 bp Feature: domain Description: Intron_maturas2 Location: 2931 -3234 bp Feature: gene Location: 3768-6062 bp Ori: CUO99312.1 Feature: domain Description: OMP_RagA_SusC Location: 3840-6057 bp Feature: domain Description: OMP_RagA_SusC Location: 3840-6057 bp Feature: gene Location: 6087-7748 bp Ori: CUO99350.1 Feature: domain Description: SusD Location: 6486-7584 bp Feature: domain Description: SusD Location: 6486-7584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STN (smart00965), OMP_RagA_SusC (TIGR04056), RVT-GII, Intron_maturas2 (pfam01348), SusD (NF033071)

Seq: CZAE01000005.1 Bacteroides thetaiotaomicron strain 2789STDY5834846 genome assembly, contig: SCcontig000005, whole genome shotgun sequence (264767 bp)
Overview 1 RT 1: 26121-32785 bp Neighborhood of RT #1 [26121, 32808] DUF3875 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4141 Bac_Flav_CT_J Feature: gene Location: 26121-26291 bp Ori: CUO91054.1 Feature: domain Description: DUF3875 Location: 26130-26286 bp Feature: domain Description: DUF3875 Location: 2 6130-2 62 86 bp Feature: gene Location: 26388-28217 bp Ori: CUO91077.1 Feature: domain Description: Bac_Flav_CT_G Location: 26391-28203 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 6391-2 82 03 bp Feature: gene Location: 28764-30575 bp Ori: CUO91097.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29028-29850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 902 8-2 9850 bp Feature: domain Description: Intron_maturas2 Location: 29925-30240 bp Feature: domain Description: Intron_maturas2 Location: 2 992 5-302 40 bp Feature: domain Description: HNHc Note: nucleases Location: 30396-30546 bp Feature: domain Description: HNHc Note: nucleases Location: 30396-30546 bp Feature: gene Location: 31132-31764 bp Ori: CUO91126.1 Feature: domain Description: DUF4141 Location: 31150-31303 bp Feature: domain Description: DUF4141 Location: 31150-31303 bp Feature: gene Location: 31789-32808 bp Ori: CUO91141.1 Feature: domain Description: Bac_Flav_CT_J Location: 31813-32785 bp Feature: domain Description: Bac_Flav_CT_J Location: 31813-32 785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), Bac_Flav_CT_J (TIGR03782)

Seq: CZAE01000002.1 Bacteroides thetaiotaomicron strain 2789STDY5834846 genome assembly, contig: SCcontig000002, whole genome shotgun sequence (370504 bp)
Overview 1 RT 1: 89090-99444 bp 2 RT 2: 139518-144213 bp Neighborhood of RT #1 [89090, 99455] RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [139518, 144213] HTH_Hin_like RVT-UG27 Feature: gene Location: 89090-91054 bp Feature: gene Location: 91117-91470 bp Feature: gene Location: 91461-92681 bp Ori: CUO53504.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 91665-92406 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 91665-92406 bp Feature: gene Location: 92895-93296 bp Ori: CUO53542.1 Feature: domain Description: Avd_like Location: 92934-93273 bp Feature: domain Description: Avd_like Location: 9293 4-93 273 bp Feature: gene Location: 93426-99455 bp Ori: CUO53576.1 Feature: domain Description: DUF1566 Location: 99141-99444 bp Feature: domain Description: DUF1566 Location: 99141-99444 bp Feature: gene Location: 139518-140129 bp Feature: gene Location: 140119-140442 bp Ori: CUO55461.1 Feature: domain Description: HTH_Hin_like Location: 140170-140272 bp Feature: domain Description: HTH_Hin_like Location: 140170-140272 bp Feature: gene Location: 140439-141707 bp Ori: CUO55500.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 140628-141264 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 140628-141264 bp Feature: gene Location: 142731-143189 bp Feature: gene Location: 143224-144213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), HTH_Hin_like (cd00569), RVT-UG27

Seq: CZAE01000021.1 Bacteroides thetaiotaomicron strain 2789STDY5834846 genome assembly, contig: SCcontig000021, whole genome shotgun sequence (131497 bp)
Overview 1 RT 1: 18356-25219 bp Neighborhood of RT #1 [18356, 25344] KefB TrkA_C TrkA_C RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 SesA Feature: gene Location: 18356-20629 bp Ori: CUP93984.1 Gene: ybaL_2 Feature: domain Description: KefB Location: 18365-19505 bp Feature: domain Description: KefB Location: 18365-19505 bp Feature: domain Description: TrkA_C Location: 20135-20336 bp Feature: domain Description: TrkA_C Location: 20135-20336 bp Feature: domain Description: TrkA_C Location: 20402-20594 bp Feature: domain Description: TrkA_C Location: 204 02-20594 bp Feature: gene Location: 20896-21327 bp Feature: gene Location: 22227-24050 bp Ori: CUP94069.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22491-23313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224 91-23313 bp Feature: domain Description: Intron_maturas2 Location: 23487-23730 bp Feature: domain Description: Intron_maturas2 Location: 234 87-23730 bp Feature: domain Description: HNHc Note: nucleases Location: 23841-24012 bp Feature: domain Description: HNHc Note: nucleases Location: 2384 1-24 012 bp Feature: gene Location: 24311-24691 bp Ori: CUP94108.1 Feature: domain Description: DUF3876 Location: 24392-24656 bp Feature: domain Description: DUF3876 Location: 24 392-24 656 bp Feature: gene Location: 24715-25344 bp Ori: CUP94140.1 Feature: domain Description: DUF4141 Location: 24727-24883 bp Feature: domain Description: DUF4 14 1 Location: 24 727-24 883 bp Feature: domain Description: SesA Location: 24889-25219 bp Feature: domain Description: SesA Location: 24 889-25219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KefB (COG0475), TrkA_C (pfam02080), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992), DUF4141 (pfam13605), SesA (pfam17107)

Seq: CZAE01000025.1 Bacteroides thetaiotaomicron strain 2789STDY5834846 genome assembly, contig: SCcontig000025, whole genome shotgun sequence (113532 bp)
Overview 1 RT 1: 40478-43777 bp Neighborhood of RT #1 [40478, 43803] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 40478-40705 bp Feature: gene Location: 40788-41063 bp Feature: gene Location: 41029-42450 bp Ori: CUQ08833.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41401-42106 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41401-42106 bp Feature: gene Location: 42465-42845 bp Ori: CUQ08865.1 Feature: domain Description: Avd_like Location: 42492-42798 bp Feature: domain Description: Avd_like Location: 42492-42798 bp Feature: gene Location: 42991-43803 bp Ori: CUQ08893.1 Feature: domain Description: DUF1566 Location: 43525-43777 bp Feature: domain Description: DUF15 66 Location: 435 25 -43777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: CZAE01000015.1 Bacteroides thetaiotaomicron strain 2789STDY5834846 genome assembly, contig: SCcontig000015, whole genome shotgun sequence (161861 bp)
Overview 1 RT 1: 110733-123557 bp Neighborhood of RT #1 [110733, 123557] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 110733-112529 bp Ori: CUP67719.1 Gene: rpsA Feature: domain Description: rpsA Location: 110802-112413 bp Feature: domain Description: rpsA Location: 110802-112413 bp Feature: gene Location: 112698-118577 bp Ori: CUP67761.1 Feature: domain Description: DUF4011 Location: 113862-114372 bp Feature: domain Description: DUF4011 Location: 11386 2-114372 bp Feature: domain Description: DEXXQc_SF1 Location: 114711-115302 bp Feature: domain Description: DEXXQc_SF1 Location: 114711-115302 bp Feature: domain Description: DEXXQc_SF1 Location: 115983-116898 bp Feature: domain Description: DEXXQc_SF1 Location: 115983-116 898 bp Feature: domain Description: TIGR00376 Location: 117030-117420 bp Feature: domain Description: TIGR00376 Location: 117030-117420 bp Feature: domain Description: MTES_1575 Location: 117576-117864 bp Feature: domain Description: MTES_1575 Location: 117576 -11786 4 bp Feature: domain Description: DUF3320 Location: 118095-118215 bp Feature: domain Description: DUF3320 Location: 118095-118215 bp Feature: gene Location: 118619-119752 bp Ori: CUP67826.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 118943-119489 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 118943-119489 bp Feature: gene Location: 119957-122143 bp Feature: gene Location: 123048-123557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: CZAE01000001.1 Bacteroides thetaiotaomicron strain 2789STDY5834846 genome assembly, contig: SCcontig000001, whole genome shotgun sequence (545501 bp)
Overview 1 RT 1: 348784-356937 bp Neighborhood of RT #1 [348784, 356937] HTH_3 YhcG RVT-UG3 RVT-UG8 Mob_Pre KOG2911 Feature: gene Location: 348784-349002 bp Ori: CUO41783.1 Feature: domain Description: HTH_3 Location: 348850-348970 bp Feature: domain Description: HTH_3 Location: 348850-34897 0 bp Feature: gene Location: 348995-350113 bp Ori: CUO41822.1 Feature: domain Description: YhcG Location: 349421-349901 bp Feature: domain Description: YhcG Location: 349421-349901 bp Feature: gene Location: 350192-351616 bp Ori: CUO41855.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 350636-351155 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 350636-351155 bp Feature: gene Location: 351613-353805 bp Ori: CUO41885.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 352213-352663 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 352213-352663 bp Feature: gene Location: 354184-355731 bp Ori: CUO41920.1 Feature: domain Description: Mob_Pre Location: 354592-354874 bp Feature: domain Description: Mob_Pre Location: 354592-35487 4 bp Feature: domain Description: KOG2911 Location: 355000-355288 bp Feature: domain Description: KOG2911 Location: 355000-355288 bp Feature: gene Location: 355888-356937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), YhcG (COG4804), RVT-UG3, RVT-UG8, Mob_Pre (pfam01076), KOG2911 (KOG2911, Uncharacterized conserved protein )