myRT

myRT report for GCA_001405155.1_14207_7_20

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Seq: CZAN01000072.1 Bacteroides vulgatus strain 2789STDY5834897 genome assembly, contig: SCcontig000072, whole genome shotgun sequence (15812 bp)
Overview 1 RT 1: 7927-12298 bp Neighborhood of RT #1 [7927, 12298] RVT-DGRs Feature: gene Location: 7927-9351 bp Feature: gene Location: 9483-9716 bp Feature: gene Location: 10091-11392 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10298-10979 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 0298-1 0979 bp Feature: gene Location: 11389-11874 bp Feature: gene Location: 12056-12298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CZAN01000003.1 Bacteroides vulgatus strain 2789STDY5834897 genome assembly, contig: SCcontig000003, whole genome shotgun sequence (165730 bp)
Overview 1 RT 1: 74741-79760 bp Neighborhood of RT #1 [74741, 79760] ArgoMid ArgoMid RVT-DGRs Feature: gene Location: 74741-74983 bp Feature: domain Description: ArgoMid Location: 74756-74864 bp Feature: domain Description: ArgoMid Location: 74756-74864 bp Feature: domain Description: ArgoMid Location: 74879-74978 bp Feature: domain Description: ArgoMid Location: 74879-74978 bp Feature: gene Location: 75163-75648 bp Feature: gene Location: 75645-76949 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 75855-76533 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 75855-76533 bp Feature: gene Location: 77275-77469 bp Feature: gene Location: 77466-79760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArgoMid (pfam16487), RVT-DGRs

Seq: CZAN01000001.1 Bacteroides vulgatus strain 2789STDY5834897 genome assembly, contig: SCcontig000001, whole genome shotgun sequence (192003 bp)
Overview 1 RT 1: 54133-60329 bp Neighborhood of RT #1 [54133, 60454] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 54133-54459 bp Feature: gene Location: 54507-54761 bp Feature: domain Description: DUF4134 Location: 54543-54744 bp Feature: domain Description: DUF413 4 Location: 54543 -54744 bp Feature: gene Location: 55303-57114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55567-56389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55567-563 89 bp Feature: domain Description: Intron_maturas2 Location: 56578-56788 bp Feature: domain Description: Intron_maturas2 Location: 56578-56788 bp Feature: domain Description: HNHc Note: nucleases Location: 56938-57043 bp Feature: domain Description: HNHc Note: nucleases Location: 5693 8-57043 bp Feature: gene Location: 57346-57642 bp Feature: domain Description: DUF4133 Location: 57388-57565 bp Feature: domain Description: DUF413 3 Location: 573 88-57565 bp Feature: gene Location: 57686-60454 bp Feature: domain Description: Bac_Flav_CT_G Location: 57896-59402 bp Feature: domain Description: Bac_Flav_CT_G Location: 57896-59402 bp Feature: domain Description: Bac_Flav_CT_G Location: 59507-60329 bp Feature: domain Description: Bac_Flav_CT_G Location: 59507-603 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783)

Seq: CZAN01000046.1 Bacteroides vulgatus strain 2789STDY5834897 genome assembly, contig: SCcontig000046, whole genome shotgun sequence (44455 bp)
Overview 1 RT 1: 27343-33088 bp Neighborhood of RT #1 [27343, 33088] HTH_17 HTH_17 HTH_17 HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-Retrons Feature: gene Location: 27343-28239 bp Feature: domain Description: HTH_17 Location: 27538-27673 bp Feature: domain Description: HTH_17 Location: 27538-27673 bp Feature: domain Description: HTH_17 Location: 27739-27886 bp Feature: domain Description: HTH_17 Location: 27739-27886 bp Feature: domain Description: HTH_17 Location: 27913-28042 bp Feature: domain Description: HTH_17 Location: 27913-2804 2 bp Feature: domain Description: HTH_17 Location: 28081-28222 bp Feature: domain Description: HTH_17 Location: 28081-28222 bp Feature: gene Location: 28332-29438 bp Feature: domain Description: Arm-DNA-bind_5 Location: 28356-28563 bp Feature: domain Description: Arm-DNA-bind_5 Location: 28356-28563 bp Feature: domain Description: Phage_int_SAM_5 Location: 28620-28887 bp Feature: domain Description: Phage_int_SAM_5 Location: 28620-28887 bp Feature: domain Description: INTN1_C_like Location: 28947-29406 bp Feature: domain Description: INTN1_C_like Location: 2894 7-294 06 bp Feature: gene Location: 29547-30596 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29775-30354 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29775-30354 bp Feature: gene Location: 30731-32029 bp Feature: gene Location: 32312-33088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons