myRT

myRT report for GCA_001405295.1_14207_7_7

Download annotations/find similar RTs

Seq: CZAJ01000019.1 Agathobacter rectalis strain 2789STDY5834884 genome assembly, contig: SCcontig000019, whole genome shotgun sequence (60284 bp)
Overview 1 RT 1: 57805-60087 bp Neighborhood of RT #1 [57805, 60098] DUF16 RVT-DGRs Avd_like Feature: gene Location: 57805-58113 bp Ori: CUP15599.1 Feature: domain Description: DUF16 Location: 57820-58006 bp Feature: domain Description: DUF1 6 Location: 57820-58006 bp Feature: gene Location: 58154-58381 bp Feature: gene Location: 58374-59480 bp Ori: CUP15654.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58578-59316 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58578-5931 6 bp Feature: gene Location: 59763-60098 bp Ori: CUP15683.1 Feature: domain Description: Avd_like Location: 59781-60087 bp Feature: domain Description: Avd_like Location: 59781 -60087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF16 (pfam01519), RVT-DGRs, Avd_like (cd16376)

Seq: CZAJ01000068.1 Agathobacter rectalis strain 2789STDY5834884 genome assembly, contig: SCcontig000068, whole genome shotgun sequence (882 bp)
Overview 1 RT 1: 61-625 bp Neighborhood of RT #1 [61, 810] RVT-GII GIIM Feature: gene Location: 61-810 bp Ori: CUP48447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64-358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64-358 bp Feature: domain Description: GIIM Note: maturase Location: 415-625 bp Feature: domain Description: GIIM Note: maturase Location: 415-62 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CZAJ01000063.1 Agathobacter rectalis strain 2789STDY5834884 genome assembly, contig: SCcontig000063, whole genome shotgun sequence (1671 bp)
Overview 1 RT 1: 205-1426 bp Neighborhood of RT #1 [205, 1599] RVT-GII GIIM Feature: gene Location: 205-1599 bp Ori: CUP47768.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 523-1147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 523 -1147 bp Feature: domain Description: GIIM Note: maturase Location: 1204-1426 bp Feature: domain Description: GIIM Note: maturase Location: 1204-1426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CZAJ01000002.1 Agathobacter rectalis strain 2789STDY5834884 genome assembly, contig: SCcontig000002, whole genome shotgun sequence (167980 bp)
Overview 1 RT 1: 83392-87379 bp Neighborhood of RT #1 [83392, 87379] RVT-DGRs Feature: gene Location: 83392-83535 bp Feature: gene Location: 83537-83860 bp Feature: gene Location: 83815-84924 bp Ori: CUO65211.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 84007-84709 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 84 007-84 709 bp Feature: gene Location: 85405-86934 bp Feature: gene Location: 86936-87379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CZAJ01000001.1 Agathobacter rectalis strain 2789STDY5834884 genome assembly, contig: SCcontig000001, whole genome shotgun sequence (283778 bp)
Overview 1 RT 1: 202961-206575 bp Neighborhood of RT #1 [202961, 206577] Phage_holin_4_1 RVT-DGRs Avd_like PHA00653 Feature: gene Location: 202961-203443 bp Ori: CUO59792.1 Feature: domain Description: Phage_holin_4_1 Location: 202994-203354 bp Feature: domain Description: Phage_holin_4_1 Location: 202994-20335 4 bp Feature: gene Location: 203446-203625 bp Feature: gene Location: 203650-204711 bp Ori: CUO59872.1 Gene: ltrA_1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 203878-204580 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 203878-2045 80 bp Feature: gene Location: 205038-205394 bp Ori: CUO59916.1 Feature: domain Description: Avd_like Location: 205068-205374 bp Feature: domain Description: Avd_like Location: 205 068-205 374 bp Feature: gene Location: 205435-206577 bp Ori: CUO59938.1 Feature: domain Description: PHA00653 Location: 205558-206575 bp Feature: domain Description: PHA0065 3 Location: 205 5 5 8-2065 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant)

Seq: CZAJ01000047.1 Agathobacter rectalis strain 2789STDY5834884 genome assembly, contig: SCcontig000047, whole genome shotgun sequence (11771 bp)
Overview 1 RT 1: 584-3820 bp Neighborhood of RT #1 [584, 3831] RVT-GII KOG2414 thioredoxin Feature: gene Location: 584-1456 bp Ori: CUP42803.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1409 bp Feature: gene Location: 2063-3316 bp Ori: CUP42829.1 Gene: pepP Feature: domain Description: KOG2414 Location: 2072-3305 bp Feature: domain Description: KOG2414 Location: 2072-3305 bp Feature: gene Location: 3523-3831 bp Ori: CUP42863.1 Gene: trxA_3 Feature: domain Description: thioredoxin Location: 3550-3820 bp Feature: domain Description: thioredoxin Location: 3550-3820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG2414 (KOG2414, Putative Xaa-Pro aminopeptidase ), thioredoxin (TIGR01068)

Seq: CZAJ01000005.1 Agathobacter rectalis strain 2789STDY5834884 genome assembly, contig: SCcontig000005, whole genome shotgun sequence (138619 bp)
Overview 1 RT 1: 39362-44445 bp Neighborhood of RT #1 [39362, 44450] LexA_DNA_bind RVT_N RVT-GII GIIM HipB COG2932 XRE Feature: gene Location: 39362-39601 bp Feature: gene Location: 39614-39826 bp Ori: CUO78071.1 Gene: lexA_2 Feature: domain Description: LexA_DNA_bind Location: 39623-39812 bp Feature: domain Description: LexA_DNA_bind Location: 39623-39812 bp Feature: gene Location: 41166-42635 bp Ori: CUO78092.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 41211-41448 bp Feature: domain Description: RVT_N Location: 41211-41448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41499-42147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41499-42147 bp Feature: domain Description: GIIM Note: maturase Location: 42198-42432 bp Feature: domain Description: GIIM Note: maturase Location: 42198-42432 bp Feature: gene Location: 43462-44193 bp Ori: CUO78118.1 Feature: domain Description: HipB Location: 43474-43690 bp Feature: domain Description: HipB Location: 4347 4-43690 bp Feature: domain Description: COG2932 Location: 43846-44158 bp Feature: domain Description: COG2932 Location: 43846-44158 bp Feature: gene Location: 44250-44450 bp Ori: CUO78141.1 Feature: domain Description: XRE Location: 44262-44445 bp Feature: domain Description: XRE Location: 44262-44445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LexA_DNA_bind (pfam01726), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), XRE (COG1476)