myRT

myRT report for GCA_001405335.1_13470_2_84

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Seq: CZAB01000088.1 [Clostridium] clostridioforme strain 2789STDY5834865 genome assembly, contig: SCcontig000088, whole genome shotgun sequence (13597 bp)
Overview 1 RT 1: 979-5986 bp Neighborhood of RT #1 [979, 6036] Glyco_hydro_42 Glyco_hydro_42M Glyco_hydro_42C RVT-GII GIIM BglG AcrB AcrB Feature: gene Location: 979-2040 bp Feature: domain Description: Glyco_hydro_42 Location: 1015-1735 bp Feature: domain Description: Glyco_hydro_42 Location: 1 01 5-1 735 bp Feature: gene Location: 2001-2363 bp Feature: domain Description: Glyco_hydro_42M Location: 2007-2145 bp Feature: domain Description: Glyco_hydro_42M Location: 2007-21 45 bp Feature: domain Description: Glyco_hydro_42C Location: 2181-2340 bp Feature: domain Description: Glyco_hydro_42C Location: 21 81 -2340 bp Feature: gene Location: 2938-4236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3193-3883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 93-3883 bp Feature: domain Description: GIIM Note: maturase Location: 3961-4159 bp Feature: domain Description: GIIM Note: maturase Location: 3961 -41 59 bp Feature: gene Location: 5055-5444 bp Feature: domain Description: BglG Location: 5058-5244 bp Feature: domain Description: BglG Location: 5058-5244 bp Feature: gene Location: 5503-6036 bp Feature: domain Description: AcrB Location: 5566-5761 bp Feature: domain Description: AcrB Location: 5566-5761 bp Feature: domain Description: AcrB Location: 5773-5986 bp Feature: domain Description: AcrB Location: 5773-5986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_42M (pfam08532), Glyco_hydro_42C (pfam08533), RVT-GII, GIIM (pfam08388), BglG (COG3711), AcrB (COG0841), Glyco_hydro_42 (pfam02449)

Seq: CZAB01000056.1 [Clostridium] clostridioforme strain 2789STDY5834865 genome assembly, contig: SCcontig000056, whole genome shotgun sequence (29648 bp)
Overview 1 RT 1: 17710-23654 bp Neighborhood of RT #1 [17710, 23788] TrbL Maff2 RVT-GII HNHc Maff2 VirD4 Feature: gene Location: 17710-18579 bp Feature: domain Description: TrbL Location: 18004-18517 bp Feature: domain Description: TrbL Location: 18004-18517 bp Feature: gene Location: 18643-18891 bp Feature: domain Description: Maff2 Location: 18688-18838 bp Feature: domain Description: Maff2 Location: 18688-18838 bp Feature: gene Location: 19190-21076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19523-20261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1952 3-2 02 61 bp Feature: domain Description: HNHc Note: nucleases Location: 20810-20960 bp Feature: domain Description: HNHc Note: nucleases Location: 2 0810-2 0960 bp Feature: gene Location: 21796-21927 bp Feature: domain Description: Maff2 Location: 21799-21925 bp Feature: domain Description: Maff2 Location: 2 1799-2 192 5 bp Feature: gene Location: 21995-23788 bp Feature: domain Description: VirD4 Location: 22247-23654 bp Feature: domain Description: VirD4 Location: 2 2 2 47-2 3654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbL (pfam04610), Maff2 (pfam12750), RVT-GII, HNHc (smart00507), VirD4 (COG3505)

Seq: CZAB01000152.1 [Clostridium] clostridioforme strain 2789STDY5834865 genome assembly, contig: SCcontig000152, whole genome shotgun sequence (2171 bp)
Overview 1 RT 1: 47-2036 bp Neighborhood of RT #1 [47, 2071] group_II_RT_mat Zn_ribbon_recom excise RVT-GII Feature: gene Location: 47-520 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 227-446 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 227-446 bp Feature: gene Location: 528-1577 bp Feature: domain Description: Zn_ribbon_recom Location: 546-720 bp Feature: domain Description: Zn_ribbon_recom Location: 546-720 bp Feature: domain Description: excise Location: 1416-1497 bp Feature: domain Description: excise Location: 1416-1497 bp Feature: gene Location: 1619-2071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1622-2036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1622-203 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), Zn_ribbon_recom (pfam13408), excise (TIGR01764)

Seq: CZAB01000048.1 [Clostridium] clostridioforme strain 2789STDY5834865 genome assembly, contig: SCcontig000048, whole genome shotgun sequence (37042 bp)
Overview 1 RT 1: 19418-26282 bp Neighborhood of RT #1 [19418, 26287] P-type_ATPase_HM PTS_EIIC_2 RVT-GII GIIM AhpC AhpF_homolog Feature: gene Location: 19418-21493 bp Feature: domain Description: P-type_ATPase_HM Location: 19724-21479 bp Feature: domain Description: P-type_ATPase_HM Location: 19724 -214 79 bp Feature: gene Location: 22109-23137 bp Feature: domain Description: PTS_EIIC_2 Location: 22196-23099 bp Feature: domain Description: PTS_EIIC_2 Location: 22196-23099 bp Feature: gene Location: 23632-25023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23947-24571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2394 7-24 571 bp Feature: domain Description: GIIM Note: maturase Location: 24628-24838 bp Feature: domain Description: GIIM Note: maturase Location: 24 628-24 838 bp Feature: gene Location: 25277-25840 bp Feature: domain Description: AhpC Location: 25280-25838 bp Feature: domain Description: AhpC Location: 25280-25838 bp Feature: gene Location: 25928-26287 bp Feature: domain Description: AhpF_homolog Location: 25931-26282 bp Feature: domain Description: AhpF_homolog Location: 25931-26282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P-type_ATPase_HM (cd07553), PTS_EIIC_2 (pfam13303), RVT-GII, GIIM (pfam08388), AhpC (TIGR03137), AhpF_homolog (TIGR03143)

Seq: CZAB01000097.1 [Clostridium] clostridioforme strain 2789STDY5834865 genome assembly, contig: SCcontig000097, whole genome shotgun sequence (11514 bp)
Overview 1 RT 1: 4949-9924 bp Neighborhood of RT #1 [4949, 10091] AlsT DEDD_Tnp_IS110 RVT-GII DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 4949-6415 bp Feature: domain Description: AlsT Location: 4952-6341 bp Feature: domain Description: AlsT Location: 495 2-6341 bp Feature: gene Location: 6500-6775 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 6560-6752 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 65 60-675 2 bp Feature: gene Location: 7275-8660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7539-8364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 39-8364 bp Feature: gene Location: 9202-9639 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 9214-9457 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 9214-945 7 bp Feature: gene Location: 9615-10091 bp Feature: domain Description: Transposase_20 Location: 9675-9924 bp Feature: domain Description: Transposase_20 Location: 9675 -9924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlsT (COG1115), DEDD_Tnp_IS110 (pfam01548), RVT-GII, Transposase_20 (pfam02371)

Seq: CZAB01000095.1 [Clostridium] clostridioforme strain 2789STDY5834865 genome assembly, contig: SCcontig000095, whole genome shotgun sequence (11791 bp)
Overview 1 RT 1: 2443-7832 bp Neighborhood of RT #1 [2443, 7832] DUF262 AlbA_2 TrmA RVT-GII group_II_RT_mat Feature: gene Location: 2443-4221 bp Feature: domain Description: DUF262 Location: 2500-2944 bp Feature: domain Description: DUF26 2 Location: 2500-2944 bp Feature: domain Description: AlbA_2 Location: 3703-4171 bp Feature: domain Description: AlbA_2 Location: 3703-4171 bp Feature: gene Location: 4293-5702 bp Feature: domain Description: TrmA Location: 4302-5652 bp Feature: domain Description: TrmA Location: 4302-56 52 bp Feature: gene Location: 6114-6644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6138-6564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 138-6 56 4 bp Feature: gene Location: 6646-6927 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6682-6835 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6 6 82-6 835 bp Feature: gene Location: 7518-7832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), AlbA_2 (pfam04326), TrmA (COG2265), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: CZAB01000058.1 [Clostridium] clostridioforme strain 2789STDY5834865 genome assembly, contig: SCcontig000058, whole genome shotgun sequence (28138 bp)
Overview 1 RT 1: 24746-27481 bp Neighborhood of RT #1 [24746, 27654] RVT-GII GIIM Feature: gene Location: 24746-25111 bp Feature: gene Location: 25056-26144 bp Feature: gene Location: 26374-27654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26584-27199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26584-27 199 bp Feature: domain Description: GIIM Note: maturase Location: 27262-27481 bp Feature: domain Description: GIIM Note: maturase Location: 27 262-27 481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CZAB01000003.1 [Clostridium] clostridioforme strain 2789STDY5834865 genome assembly, contig: SCcontig000003, whole genome shotgun sequence (201721 bp)
Overview 1 RT 1: 92305-97914 bp Neighborhood of RT #1 [92305, 97925] BDH NADPH_oxidoreductase_1 RVT-GII GIIM gcvT PRK01202 Feature: gene Location: 92305-93489 bp Feature: domain Description: BDH Location: 92314-93472 bp Feature: domain Description: BDH Location: 92314-93472 bp Feature: gene Location: 93554-94144 bp Feature: domain Description: NADPH_oxidoreductase_1 Location: 93557-94121 bp Feature: domain Description: NADPH_oxidoreductase_1 Location: 93557-94121 bp Feature: gene Location: 94838-96253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95186-95804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9518 6-958 04 bp Feature: domain Description: GIIM Note: maturase Location: 95858-96077 bp Feature: domain Description: GIIM Note: maturase Location: 958 58 -96077 bp Feature: gene Location: 96367-97476 bp Feature: domain Description: gcvT Location: 96400-97471 bp Feature: domain Description: gcvT Location: 96400-97471 bp Feature: gene Location: 97545-97925 bp Feature: domain Description: PRK01202 Location: 97548-97914 bp Feature: domain Description: PRK01202 Location: 97548 -97914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BDH (cd08187), NADPH_oxidoreductase_1, RVT-GII, GIIM (pfam08388), gcvT (TIGR00528), PRK01202 (glycine cleavage system protein GcvH)

Seq: CZAB01000006.1 [Clostridium] clostridioforme strain 2789STDY5834865 genome assembly, contig: SCcontig000006, whole genome shotgun sequence (148344 bp)
Overview 1 RT 1: 76521-81665 bp Neighborhood of RT #1 [76521, 81679] VirD4 RVT_N RVT-GII GIIM TraG_VirD4 DUF3801 Feature: gene Location: 76521-76763 bp Feature: gene Location: 76971-78077 bp Feature: domain Description: VirD4 Location: 76983-77976 bp Feature: domain Description: VirD4 Location: 769 83-779 76 bp Feature: gene Location: 78213-79877 bp Feature: RT Description: RVT_N Location: 78258-78501 bp Feature: RT Description: RVT_N Location: 78258-78501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78546-79197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78546-79 19 7 bp Feature: domain Description: GIIM Note: maturase Location: 79251-79482 bp Feature: domain Description: GIIM Note: maturase Location: 79 251-79 482 bp Feature: gene Location: 80460-81182 bp Feature: domain Description: TraG_VirD4 Location: 80889-81066 bp Feature: domain Description: TraG_VirD4 Location: 80889 -81066 bp Feature: gene Location: 81179-81679 bp Feature: domain Description: DUF3801 Location: 81248-81665 bp Feature: domain Description: DUF3801 Location: 81248-81665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG_VirD4, DUF3801 (pfam12687)