myRT

myRT report for GCA_001405515.1_14207_7_69

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Seq: CZBL01000002.1 Bacteroides caccae strain 2789STDY5834946 genome assembly, contig: SCcontig000002, whole genome shotgun sequence (501358 bp)
Overview 1 RT 1: 440763-447986 bp Neighborhood of RT #1 [440763, 447986] CotH LRR_AMN1 RVT-DGRs Feature: gene Location: 440763-445196 bp Ori: CUP72141.1 Feature: domain Description: CotH Location: 441468-442356 bp Feature: domain Description: CotH Location: 441 468-442356 bp Feature: domain Description: LRR_AMN1 Location: 442944-443415 bp Feature: domain Description: LRR_AMN1 Location: 442944-44341 5 bp Feature: gene Location: 445747-447006 bp Ori: CUP72177.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 445912-446509 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44591 2-446509 bp Feature: gene Location: 447008-447490 bp Feature: gene Location: 447699-447986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs

Seq: CZBL01000015.1 Bacteroides caccae strain 2789STDY5834946 genome assembly, contig: SCcontig000015, whole genome shotgun sequence (157491 bp)
Overview 1 RT 1: 115719-127735 bp Neighborhood of RT #1 [115719, 127737] GlnA3 RVT-Retrons DNA2 MTES_1575 DUF3320 DUF4011 DEXXQc_SF1 DEXXQc_SF1 Feature: gene Location: 115719-117908 bp Ori: CUQ44463.1 Gene: glnA_2 Feature: domain Description: GlnA3 Location: 115791-117906 bp Feature: domain Description: GlnA3 Location: 115791-117906 bp Feature: gene Location: 118345-120456 bp Feature: gene Location: 120659-121789 bp Ori: CUQ44478.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 120980-121532 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 0980-12 1532 bp Feature: gene Location: 121786-123615 bp Ori: CUQ44488.1 Feature: domain Description: DNA2 Location: 121789-122524 bp Feature: domain Description: DNA2 Location: 12 1789-12 2 52 4 bp Feature: domain Description: MTES_1575 Location: 122590-122875 bp Feature: domain Description: MTES_1575 Location: 12 2 590-12 2 875 bp Feature: domain Description: DUF3320 Location: 123124-123265 bp Feature: domain Description: DUF332 0 Location: 12 312 4-12 32 65 bp Feature: gene Location: 123616-127737 bp Ori: CUQ44498.1 Feature: domain Description: DUF4011 Location: 124831-125344 bp Feature: domain Description: DUF4011 Location: 12 4831-12 5344 bp Feature: domain Description: DEXXQc_SF1 Location: 125683-126298 bp Feature: domain Description: DEXXQc_SF1 Location: 12 5683-12 62 98 bp Feature: domain Description: DEXXQc_SF1 Location: 126928-127735 bp Feature: domain Description: DEXXQc_SF1 Location: 12 692 8-12 7735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DNA2 (COG1112), MTES_1575 (pfam18741), DUF3320 (pfam11784), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043)

Seq: CZBL01000032.1 Bacteroides caccae strain 2789STDY5834946 genome assembly, contig: SCcontig000032, whole genome shotgun sequence (18294 bp)
Overview 1 RT 1: 8122-17329 bp Neighborhood of RT #1 [8122, 17817] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Feature: gene Location: 8122-9288 bp Feature: gene Location: 9298-16089 bp Ori: CUQ55252.1 Feature: domain Description: Laminin_G_3 Location: 11734-12115 bp Feature: domain Description: Laminin_G_3 Location: 1173 4-12115 bp Feature: domain Description: pfam08757 Location: 12910-13234 bp Feature: domain Description: pfam08757 Location: 12910-13 23 4 bp Feature: domain Description: LRR_AMN1 Location: 13846-14290 bp Feature: domain Description: LRR_AMN1 Location: 13 846-14290 bp Feature: gene Location: 16522-17817 bp Ori: CUQ55260.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16738-17329 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1673 8-173 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs

Seq: CZBL01000016.1 Bacteroides caccae strain 2789STDY5834946 genome assembly, contig: SCcontig000016, whole genome shotgun sequence (154592 bp)
Overview 1 RT 1: 60731-67836 bp Neighborhood of RT #1 [60731, 67859] DUF4133 Bac_Flav_CT_G Bac_Flav_CT_G RVT_N RVT-GII GIIM DUF4141 Bac_Flav_CT_J Feature: gene Location: 60731-61027 bp Ori: CUQ45586.1 Feature: domain Description: DUF4133 Location: 60773-60950 bp Feature: domain Description: DUF4 133 Location: 60773-60950 bp Feature: gene Location: 61139-63346 bp Ori: CUQ45595.1 Feature: domain Description: Bac_Flav_CT_G Location: 61289-62753 bp Feature: domain Description: Bac_Flav_CT_G Location: 61289-62753 bp Feature: domain Description: Bac_Flav_CT_G Location: 62909-63290 bp Feature: domain Description: Bac_Flav_CT_G Location: 62909-63290 bp Feature: gene Location: 63917-65563 bp Ori: CUQ45605.1 Gene: ltrA Feature: domain Description: RVT_N Location: 63971-64214 bp Feature: domain Description: RVT_N Location: 63971-64 214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64259-64904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 259-64 904 bp Feature: domain Description: GIIM Note: maturase Location: 64958-65189 bp Feature: domain Description: GIIM Note: maturase Location: 64 958-65189 bp Feature: gene Location: 66183-66815 bp Ori: CUQ45616.1 Feature: domain Description: DUF4141 Location: 66213-66354 bp Feature: domain Description: DUF4 14 1 Location: 66213-66354 bp Feature: gene Location: 66840-67859 bp Ori: CUQ45626.1 Feature: domain Description: Bac_Flav_CT_J Location: 66864-67836 bp Feature: domain Description: Bac_Flav_CT_J Location: 66864 -67836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4141 (pfam13605), Bac_Flav_CT_J (TIGR03782)

Seq: CZBL01000003.1 Bacteroides caccae strain 2789STDY5834946 genome assembly, contig: SCcontig000003, whole genome shotgun sequence (390145 bp)
Overview 1 RT 1: 106862-111716 bp Neighborhood of RT #1 [106862, 111724] DUF1566 Avd_like RVT-DGRs ProW Feature: gene Location: 106862-107653 bp Ori: CUP80039.1 Feature: domain Description: DUF1566 Location: 107390-107636 bp Feature: domain Description: DUF15 66 Location: 107390-107636 bp Feature: gene Location: 108693-109022 bp Ori: CUP80069.1 Feature: domain Description: Avd_like Location: 108705-108975 bp Feature: domain Description: Avd_like Location: 108705 -108975 bp Feature: gene Location: 109037-110458 bp Ori: CUP80101.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 109409-110114 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 109409-110114 bp Feature: gene Location: 110424-110699 bp Feature: gene Location: 110897-111724 bp Ori: CUP80165.1 Gene: proW Feature: domain Description: ProW Location: 110903-111716 bp Feature: domain Description: ProW Location: 110903-111716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, ProW (COG4176)

Seq: CZBL01000009.1 Bacteroides caccae strain 2789STDY5834946 genome assembly, contig: SCcontig000009, whole genome shotgun sequence (201281 bp)
Overview 1 RT 1: 121941-131737 bp Neighborhood of RT #1 [121941, 131737] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 121941-122246 bp Feature: gene Location: 122259-129005 bp Ori: CUQ28094.1 Feature: domain Description: Laminin_G_3 Location: 123723-123813 bp Feature: domain Description: Laminin_G_3 Location: 123723-123813 bp Feature: domain Description: Laminin_G_3 Location: 124461-124884 bp Feature: domain Description: Laminin_G_3 Location: 12446 1-124884 bp Feature: gene Location: 129528-130832 bp Ori: CUQ28115.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 129741-130335 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 129741-130335 bp Feature: gene Location: 130829-131314 bp Feature: gene Location: 131495-131737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: CZBL01000011.1 Bacteroides caccae strain 2789STDY5834946 genome assembly, contig: SCcontig000011, whole genome shotgun sequence (178301 bp)
Overview 1 RT 1: 147938-151871 bp Neighborhood of RT #1 [147938, 151871] RVT-UG27 Feature: gene Location: 147938-148585 bp Feature: gene Location: 148629-149267 bp Feature: gene Location: 149260-150522 bp Ori: CUQ35684.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 149452-150088 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 149452-150088 bp Feature: gene Location: 150845-151342 bp Feature: gene Location: 151392-151871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27