myRT

myRT report for GCA_001405535.1_13414_6_71

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Seq: CYXX01000038.1 Roseburia inulinivorans strain 2789STDY5608887 genome assembly, contig: SCcontig000038, whole genome shotgun sequence (31484 bp)
Overview 1 RT 1: 188-5308 bp Neighborhood of RT #1 [188, 5352] PepE RVT-GII GIIM Peptidase_M56 Penicillinase_R Feature: gene Location: 188-790 bp Ori: CUN29374.1 Feature: domain Description: PepE Location: 221-779 bp Feature: domain Description: PepE Location: 221 -779 bp Feature: gene Location: 901-2247 bp Ori: CUN29377.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1204-1897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 204-1 897 bp Feature: domain Description: GIIM Note: maturase Location: 1957-2176 bp Feature: domain Description: GIIM Note: maturase Location: 1 957-21 76 bp Feature: gene Location: 3206-4984 bp Ori: CUN29381.1 Gene: blaR1_1 Feature: domain Description: Peptidase_M56 Location: 3227-4043 bp Feature: domain Description: Peptidase_M56 Location: 3227-4043 bp Feature: gene Location: 5125-5352 bp Ori: CUN29386.1 Feature: domain Description: Penicillinase_R Location: 5143-5308 bp Feature: domain Description: Penicillinase_R Location: 51 43-5308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PepE (COG3340), RVT-GII, GIIM (pfam08388), Peptidase_M56 (pfam05569), Penicillinase_R (pfam03965)

Seq: CYXX01000001.1 Roseburia inulinivorans strain 2789STDY5608887 genome assembly, contig: SCcontig000001, whole genome shotgun sequence (315560 bp)
Overview 1 RT 1: 143328-156760 bp Neighborhood of RT #1 [143328, 156924] EPS_sugtrans COG5610 dnaG RVT-UG10 Mrr_cat PDDEXK_2 Feature: gene Location: 143328-144560 bp Ori: CUM71616.1 Gene: wcaJ_1 Feature: domain Description: EPS_sugtrans Location: 143712-144528 bp Feature: domain Description: EPS_sugtrans Location: 143712 -14452 8 bp Feature: gene Location: 144557-146569 bp Ori: CUM71630.1 Feature: domain Description: COG5610 Location: 144833-145745 bp Feature: domain Description: COG5610 Location: 144833-145745 bp Feature: gene Location: 146772-154049 bp Ori: CUM71651.1 Gene: dnaG_1 Feature: domain Description: dnaG Location: 146781-148083 bp Feature: domain Description: dnaG Location: 146781-148083 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 148578-149223 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 148578-1492 2 3 bp Feature: gene Location: 154123-155532 bp Ori: CUM71668.1 Feature: domain Description: Mrr_cat Location: 155128-155425 bp Feature: domain Description: Mrr_cat Location: 15512 8-15542 5 bp Feature: gene Location: 156040-156924 bp Ori: CUM71682.1 Feature: domain Description: PDDEXK_2 Location: 156112-156760 bp Feature: domain Description: PDDEXK_2 Location: 156112 -156760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EPS_sugtrans (TIGR03025), COG5610 (Predicted hydrolase, HAD superfamily ), dnaG (TIGR01391), RVT-UG10, Mrr_cat (pfam04471), PDDEXK_2 (pfam12784)

Seq: CYXX01000035.1 Roseburia inulinivorans strain 2789STDY5608887 genome assembly, contig: SCcontig000035, whole genome shotgun sequence (37116 bp)
Overview 1 RT 1: 34288-36962 bp Neighborhood of RT #1 [34288, 37021] TIGR03905_4_Cys_4_Cys_4_Cys TM1586_NiRdase RVT-GII GIIM Feature: gene Location: 34288-34545 bp Ori: CUN28880.1 Feature: domain Description: TIGR03905_4_Cys_4_Cys_4_Cys Location: 34297-34525 bp Feature: domain Description: TIGR03 905_4_Cys_4_Cys_4_Cys Location: 3 4297-3 4525 bp Feature: gene Location: 35058-35726 bp Ori: CUN28885.1 Feature: domain Description: TM1586_NiRdase Location: 35067-35697 bp Feature: domain Description: TM1586_NiRdase Location: 3 5067-3 5697 bp Feature: gene Location: 36086-37021 bp Ori: CUN28890.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36092-36656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6092-3 6656 bp Feature: domain Description: GIIM Note: maturase Location: 36737-36962 bp Feature: domain Description: GIIM Note: maturase Location: 3 673 7-3 6962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03905_4_Cys_4_Cys_4_Cys, TM1586_NiRdase (pfam14512), RVT-GII, GIIM (pfam08388)