myRT

myRT report for GCA_001405555.1_13414_6_33

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Seq: CYYV01000006.1 Fusicatenibacter saccharivorans strain 2789STDY5608849 genome assembly, contig: SCcontig000006, whole genome shotgun sequence (244910 bp)
Overview 1 RT 1: 240715-244514 bp Neighborhood of RT #1 [240715, 244681] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII GIIM Feature: gene Location: 240715-242361 bp Ori: CUO22308.1 Feature: domain Description: LZ_Tnp_IS66 Location: 240874-241057 bp Feature: domain Description: LZ_Tnp_IS66 Location: 240874-241 057 bp Feature: domain Description: zf-IS66 Location: 241123-241252 bp Feature: domain Description: zf-IS66 Location: 241 1 23-241 252 bp Feature: domain Description: DDE_Tnp_IS66 Location: 241297-242170 bp Feature: domain Description: DDE_Tnp_IS66 Location: 241 297-2421 70 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 242194-242317 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2421 94-24231 7 bp Feature: gene Location: 242513-242866 bp Ori: CUO22343.1 Feature: domain Description: TnpB_IS66 Location: 242540-242822 bp Feature: domain Description: TnpB_IS66 Location: 242540-242822 bp Feature: gene Location: 243398-244681 bp Ori: CUO22388.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243608-244223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243608-244223 bp Feature: domain Description: GIIM Note: maturase Location: 244283-244514 bp Feature: domain Description: GIIM Note: maturase Location: 244283-24451 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388)

Seq: CYYV01000013.1 Fusicatenibacter saccharivorans strain 2789STDY5608849 genome assembly, contig: SCcontig000013, whole genome shotgun sequence (129234 bp)
Overview 1 RT 1: 115042-125256 bp Neighborhood of RT #1 [115042, 126050] PHA02517 DDE_Tnp_IS66 DDE_Tnp_IS66_C AAAA RVT_N RVT-GII GIIM RVT-GII GIIM COG3547 PMT_2 Feature: gene Location: 115042-117015 bp Ori: CUO73369.1 Feature: domain Description: PHA02517 Location: 115057-115840 bp Feature: domain Description: PHA02 517 Location: 115057-115840 bp Feature: domain Description: DDE_Tnp_IS66 Location: 115909-116743 bp Feature: domain Description: DDE_Tnp_IS66 Location: 115909-116743 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 116767-116890 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 116767-116890 bp Feature: gene Location: 117275-118672 bp Ori: CUO73401.1 Feature: domain Description: AAAA Location: 117284-118502 bp Feature: domain Description: AAAA Location: 1172 84-118502 bp Feature: gene Location: 119646-121112 bp Ori: CUO73428.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 119661-119904 bp Feature: domain Description: RVT_N Location: 119661-119904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119967-120609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119967-12 0609 bp Feature: domain Description: GIIM Note: maturase Location: 120660-120894 bp Feature: domain Description: GIIM Note: maturase Location: 12 0660-12 0894 bp Feature: gene Location: 121287-122603 bp Ori: CUO73467.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121548-122241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 1548-12 2 2 41 bp Feature: domain Description: GIIM Note: maturase Location: 122307-122526 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 307-12 2 52 6 bp Feature: gene Location: 122849-124087 bp Ori: CUO73497.1 Feature: domain Description: COG3547 Location: 122855-123998 bp Feature: domain Description: COG3547 Location: 12 2 855-12 3998 bp Feature: gene Location: 124605-126050 bp Ori: CUO73533.1 Feature: domain Description: PMT_2 Location: 124773-125256 bp Feature: domain Description: PMT_2 Location: 12 4773-12 52 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), AAAA (COG1672), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), PMT_2 (pfam13231)

Seq: CYYV01000002.1 Fusicatenibacter saccharivorans strain 2789STDY5608849 genome assembly, contig: SCcontig000002, whole genome shotgun sequence (291015 bp)
Overview 1 RT 1: 63629-69880 bp Neighborhood of RT #1 [63629, 69912] Cas6 Cas2_I_II_III RVT-CRISPR cas1_HMARI RAYT Feature: gene Location: 63629-64351 bp Ori: CUN56445.1 Feature: domain Description: Cas6 Location: 63632-64343 bp Feature: domain Description: Cas6 Location: 63 63 2-643 43 bp Feature: gene Location: 65409-65669 bp Ori: CUN56512.1 Feature: domain Description: Cas2_I_II_III Location: 65418-65643 bp Feature: domain Description: Cas2_I_II_III Location: 65418-65643 bp Feature: gene Location: 65677-67575 bp Ori: CUN56577.1 Gene: ltrA_1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 65884-66466 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 65884-66466 bp Feature: domain Description: cas1_HMARI Location: 66601-67567 bp Feature: domain Description: cas1_HMARI Location: 66601-67567 bp Feature: gene Location: 68938-69249 bp Feature: gene Location: 69484-69912 bp Ori: CUN56675.1 Feature: domain Description: RAYT Location: 69493-69880 bp Feature: domain Description: RAYT Location: 69493 -69880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas6 (pfam09559), Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_HMARI (TIGR03641), RAYT (COG1943)