myRT

myRT report for GCA_001405675.1_13414_6_34

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Seq: CYZE01000003.1 Hungatella hathewayi strain 2789STDY5608850 genome assembly, contig: SCcontig000003, whole genome shotgun sequence (567454 bp)
Overview 1 RT 1: 393457-398264 bp Neighborhood of RT #1 [393457, 398264] galliderm_ABC AtoC RVT-GII MFS_1 Feature: gene Location: 393457-394158 bp Feature: domain Description: galliderm_ABC Location: 393472-394138 bp Feature: domain Description: galliderm_ABC Location: 393472-3941 38 bp Feature: gene Location: 394428-394853 bp Feature: domain Description: AtoC Location: 394431-394794 bp Feature: domain Description: AtoC Location: 394431 -394794 bp Feature: gene Location: 395776-396393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395986-396367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395986-396367 bp Feature: gene Location: 396950-397780 bp Feature: domain Description: MFS_1 Location: 396980-397349 bp Feature: domain Description: MFS_1 Location: 396980-397349 bp Feature: gene Location: 397908-398264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT galliderm_ABC (TIGR03740), AtoC (COG2204), RVT-GII, MFS_1 (pfam07690)

Seq: CYZE01000047.1 Hungatella hathewayi strain 2789STDY5608850 genome assembly, contig: SCcontig000047, whole genome shotgun sequence (1867 bp)
Overview 1 RT 1: 478-1674 bp Neighborhood of RT #1 [478, 1769] RVT-GII group_II_RT_mat Feature: gene Location: 478-1455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1360 bp Feature: gene Location: 1449-1769 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1458-1674 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1458-1674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: CYZE01000006.1 Hungatella hathewayi strain 2789STDY5608850 genome assembly, contig: SCcontig000006, whole genome shotgun sequence (327902 bp)
Overview 1 RT 1: 58622-63622 bp 2 RT 2: 184155-191126 bp Neighborhood of RT #1 [58622, 63648] DUF2871 RVT-Retrons PRK14806 PRK06545 Neighborhood of RT #2 [184155, 191149] COG3943 Virulence_RhuM RVT-Retrons COG3943 PRK10296 Feature: gene Location: 58622-59305 bp Feature: gene Location: 59307-59750 bp Feature: domain Description: DUF2871 Location: 59343-59733 bp Feature: domain Description: DUF2871 Location: 593 43 -5973 3 bp Feature: gene Location: 60094-61104 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60259-60814 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60259-60814 bp Feature: gene Location: 61250-62527 bp Feature: domain Description: PRK14806 Location: 61262-62504 bp Feature: domain Description: PRK14806 Location: 61262-62504 bp Feature: gene Location: 62551-63648 bp Feature: domain Description: PRK06545 Location: 62566-63622 bp Feature: domain Description: PRK06545 Location: 62566-63 622 bp Feature: gene Location: 184155-184508 bp Feature: domain Description: COG3943 Location: 184158-184500 bp Feature: domain Description: COG3 943 Location: 184158-184500 bp Feature: gene Location: 184858-185901 bp Feature: domain Description: Virulence_RhuM Location: 185083-185833 bp Feature: domain Description: Virulence_RhuM Location: 185083 -18583 3 bp Feature: gene Location: 186330-188309 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 187467-188031 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 187467-18803 1 bp Feature: gene Location: 188402-189424 bp Feature: domain Description: COG3943 Location: 188420-189389 bp Feature: domain Description: COG3 943 Location: 188420-1893 89 bp Feature: gene Location: 190280-191149 bp Feature: domain Description: PRK10296 Location: 190385-191126 bp Feature: domain Description: PRK10296 Location: 1903 85-191126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2871 (pfam11070), RVT-Retrons, PRK14806 (bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional), PRK06545 (prephenate dehydrogenase; Validated), COG3943 (Uncharacterized conserved protein ), Virulence_RhuM (pfam13310), PRK10296 (DNA-binding transcriptional regulator ChbR; Provisional)