myRT

myRT report for GCA_001405695.1_13414_6_55

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Seq: CYXS01000004.1 Bacteroides salyersiae strain 2789STDY5608871 genome assembly, contig: SCcontig000004, whole genome shotgun sequence (426979 bp)
Overview 1 RT 1: 303160-306650 bp Neighborhood of RT #1 [303160, 306673] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 303160-305433 bp Ori: CUN04300.1 Gene: ltrA_4 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 303370-303973 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 303370-303973 bp Feature: domain Description: Cas1_I-II-III Location: 304435-305395 bp Feature: domain Description: Cas1 _I-II-III Location: 304435-305395 bp Feature: gene Location: 305466-306254 bp Ori: CUN04317.1 Feature: domain Description: Cmr6_III-B Location: 305544-306243 bp Feature: domain Description: Cmr6_III-B Location: 305544-306243 bp Feature: gene Location: 306251-306673 bp Ori: CUN04331.1 Feature: domain Description: Cas_Cmr5 Location: 306323-306650 bp Feature: domain Description: Cas_Cmr5 Location: 306323-306650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: CYXS01000017.1 Bacteroides salyersiae strain 2789STDY5608871 genome assembly, contig: SCcontig000017, whole genome shotgun sequence (4353 bp)
Overview 1 RT 1: 214-2645 bp Neighborhood of RT #1 [214, 3031] Bac_Flav_CT_G RVT_N RVT-GII GIIM Feature: gene Location: 214-786 bp Ori: CUN28610.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 220-772 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 2 0-772 bp Feature: gene Location: 1370-3031 bp Ori: CUN28615.1 Gene: ltrA_5 Feature: domain Description: RVT_N Location: 1424-1667 bp Feature: domain Description: RVT_N Location: 142 4-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1712-2360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1712 -2 360 bp Feature: domain Description: GIIM Note: maturase Location: 2414-2645 bp Feature: domain Description: GIIM Note: maturase Location: 2 414-2 645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CYXS01000001.1 Bacteroides salyersiae strain 2789STDY5608871 genome assembly, contig: SCcontig000001, whole genome shotgun sequence (1326321 bp)
Overview 1 RT 1: 137902-141294 bp 2 RT 2: 143870-146683 bp 3 RT 3: 1323052-1326182 bp Neighborhood of RT #1 [137902, 141323] DUF4141 SesA DUF3876 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [143870, 146727] RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Neighborhood of RT #3 [1323052, 1326205] Por_Secre_tail RVT-GII Intron_maturas2 HNHc Feature: gene Location: 137902-138531 bp Ori: CUM70474.1 Feature: domain Description: DUF4141 Location: 137914-138070 bp Feature: domain Description: DUF4141 Location: 13 7914-13 8070 bp Feature: domain Description: SesA Location: 138076-138406 bp Feature: domain Description: SesA Location: 13 8076-13 8406 bp Feature: gene Location: 138555-138935 bp Ori: CUM70487.1 Feature: domain Description: DUF3876 Location: 138636-138900 bp Feature: domain Description: DUF3 876 Location: 13 863 6-13 8900 bp Feature: gene Location: 139512-141323 bp Ori: CUM70498.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139776-140598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 9776-140598 bp Feature: domain Description: Intron_maturas2 Location: 140673-141000 bp Feature: domain Description: Intron_maturas2 Location: 140673 -141000 bp Feature: domain Description: HNHc Note: nucleases Location: 141144-141294 bp Feature: domain Description: HNHc Note: nucleases Location: 141144-141294 bp Feature: gene Location: 143870-145546 bp Ori: CUM70515.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 143924-144167 bp Feature: domain Description: RVT_N Location: 143 924-144167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144212-144860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144212-144860 bp Feature: domain Description: GIIM Note: maturase Location: 144911-145145 bp Feature: domain Description: GIIM Note: maturase Location: 144911-145145 bp Feature: gene Location: 146153-146398 bp Ori: CUM70533.1 Feature: domain Description: Bac_Flav_CT_G Location: 146156-146381 bp Feature: domain Description: Bac_Flav_CT_G Location: 146156-1463 81 bp Feature: gene Location: 146395-146727 bp Ori: CUM70546.1 Gene: traF_1 Feature: domain Description: DUF4133 Location: 146413-146683 bp Feature: domain Description: DUF413 3 Location: 146413 -146683 bp Feature: gene Location: 1323052-1323210 bp Feature: gene Location: 1323150-1323692 bp Ori: CUM82798.1 Feature: domain Description: Por_Secre_tail Location: 1323546-1323690 bp Feature: domain Description: Por_Secre_tail Location: 13 23 546-13 23 690 bp Feature: gene Location: 1324400-1326205 bp Ori: CUM82812.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1324664-1325486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 24664-13 25486 bp Feature: domain Description: Intron_maturas2 Location: 1325558-1325885 bp Feature: domain Description: Intron_maturas2 Location: 13 25558-13 25885 bp Feature: domain Description: HNHc Note: nucleases Location: 1326035-1326182 bp Feature: domain Description: HNHc Note: nucleases Location: 13 2603 5-13 26182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), SesA (pfam17107), DUF3876 (pfam12992), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571)
Por_Secre_tail (TIGR04183)