myRT

myRT report for GCA_001405775.1_13414_6_6

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Seq: CYYK01000002.1 Parabacteroides distasonis strain 2789STDY5608822 genome assembly, contig: SCcontig000002, whole genome shotgun sequence (461998 bp)
Overview 1 RT 1: 108215-116819 bp Neighborhood of RT #1 [108215, 116819] ChiA1_BD KOG3544 Peptidase_S74 RVT-DGRs Feature: gene Location: 108215-112069 bp Feature: domain Description: ChiA1_BD Location: 110471-110588 bp Feature: domain Description: ChiA1 _BD Location: 1 1 0471 -1 1 0588 bp Feature: domain Description: KOG3544 Location: 110993-111092 bp Feature: domain Description: KOG3544 Location: 1 1 0993-1 1 1 092 bp Feature: domain Description: Peptidase_S74 Location: 111764-111917 bp Feature: domain Description: Peptidase_S74 Location: 1 1 1 764-1 1 1 91 7 bp Feature: gene Location: 112082-112495 bp Feature: gene Location: 112553-114067 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 112751-113567 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 2751 -1 1 3567 bp Feature: gene Location: 114558-116030 bp Feature: gene Location: 116058-116819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChiA1_BD (cd12214), KOG3544 (KOG3544, Collagens (type IV and type XIII), and related proteins ), Peptidase_S74 (pfam13884), RVT-DGRs

Seq: CYYK01000012.1 Parabacteroides distasonis strain 2789STDY5608822 genome assembly, contig: SCcontig000012, whole genome shotgun sequence (194916 bp)
Overview 1 RT 1: 74978-80537 bp Neighborhood of RT #1 [74978, 80707] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 PIN_NicB-like Feature: gene Location: 74978-75067 bp Feature: gene Location: 75640-76800 bp Feature: domain Description: Arm-DNA-bind_5 Location: 75685-75925 bp Feature: domain Description: Arm-DNA-bind_5 Location: 75685-7592 5 bp Feature: domain Description: Phage_int_SAM_5 Location: 75979-76279 bp Feature: domain Description: Phage_int_SAM_5 Location: 75979-762 79 bp Feature: domain Description: INTN1_C_like Location: 76324-76783 bp Feature: domain Description: INTN1_C_like Location: 7632 4-76783 bp Feature: gene Location: 77351-79159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77615-78437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77615-78437 bp Feature: domain Description: Intron_maturas2 Location: 78563-78818 bp Feature: domain Description: Intron_maturas2 Location: 78563-78818 bp Feature: gene Location: 79361-79732 bp Feature: gene Location: 80066-80707 bp Feature: domain Description: PIN_NicB-like Location: 80084-80537 bp Feature: domain Description: PIN_NicB-like Location: 80084-80537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), PIN_NicB-like (cd18722)

Seq: CYYK01000003.1 Parabacteroides distasonis strain 2789STDY5608822 genome assembly, contig: SCcontig000003, whole genome shotgun sequence (382461 bp)
Overview 1 RT 1: 198303-200946 bp Neighborhood of RT #1 [198303, 200951] HTH_3 RVT-Retrons RhaT Feature: gene Location: 198303-198533 bp Feature: gene Location: 198630-198866 bp Feature: domain Description: HTH_3 Location: 198633-198738 bp Feature: domain Description: HTH_3 Location: 19863 3 -19873 8 bp Feature: gene Location: 198863-199723 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 199013-199544 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 199013 -199544 bp Feature: gene Location: 199866-200057 bp Feature: gene Location: 200079-200951 bp Feature: domain Description: RhaT Location: 200115-200946 bp Feature: domain Description: RhaT Location: 200115-200946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), RVT-Retrons, RhaT (TIGR00776)

Seq: CYYK01000027.1 Parabacteroides distasonis strain 2789STDY5608822 genome assembly, contig: SCcontig000027, whole genome shotgun sequence (2486 bp)
Overview 1 RT 1: 564-2031 bp Neighborhood of RT #1 [564, 2372] RVT-GII Intron_maturas2 Feature: gene Location: 564-2372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828-1650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828-1650 bp Feature: domain Description: Intron_maturas2 Location: 1728-2031 bp Feature: domain Description: Intron_maturas2 Location: 1728-2031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)