myRT

myRT report for GCA_001405875.1_13414_6_18

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Seq: CYZJ01000036.1 Roseburia hominis strain 2789STDY5608834 genome assembly, contig: SCcontig000036, whole genome shotgun sequence (32208 bp)
Overview 1 RT 1: 25023-30977 bp Neighborhood of RT #1 [25023, 31033] FeoA FeoB RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Feature: gene Location: 25023-25463 bp Feature: gene Location: 25545-27890 bp Feature: domain Description: FeoA Location: 25548-25758 bp Feature: domain Description: FeoA Location: 25548-25758 bp Feature: domain Description: FeoB Location: 25890-27882 bp Feature: domain Description: FeoB Location: 25890-27882 bp Feature: gene Location: 28252-28830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28255-28357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28255-28357 bp Feature: domain Description: GIIM Note: maturase Location: 28417-28630 bp Feature: domain Description: GIIM Note: maturase Location: 2841 7-28630 bp Feature: gene Location: 29059-30066 bp Feature: domain Description: Phage_int_SAM_1 Location: 29104-29350 bp Feature: domain Description: Phage_int_SAM_1 Location: 291 04-29350 bp Feature: domain Description: INT_RitC_C_like Location: 29434-29983 bp Feature: domain Description: INT_RitC_C_like Location: 29434-29983 bp Feature: gene Location: 30053-31033 bp Feature: domain Description: INT_RitB_C_like Location: 30392-30977 bp Feature: domain Description: INT_RitB_C_like Location: 30392-30977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FeoA (smart00899), FeoB (COG0370), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797)

Seq: CYZJ01000056.1 Roseburia hominis strain 2789STDY5608834 genome assembly, contig: SCcontig000056, whole genome shotgun sequence (23881 bp)
Overview 1 RT 1: 16066-22214 bp Neighborhood of RT #1 [16066, 22405] rplI PRK05748 RVT-GII GIIM GIIM LemA DUF2207 DUF2207 Feature: gene Location: 16066-16512 bp Feature: domain Description: rplI Location: 16069-16507 bp Feature: domain Description: rplI Location: 16069-16507 bp Feature: gene Location: 16524-17885 bp Feature: domain Description: PRK05748 Location: 16533-17838 bp Feature: domain Description: PRK05748 Location: 16533-17838 bp Feature: gene Location: 18583-20007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18811-19432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18811-19432 bp Feature: domain Description: GIIM Note: maturase Location: 19504-19633 bp Feature: domain Description: GIIM Note: maturase Location: 19504-19633 bp Feature: domain Description: GIIM Note: maturase Location: 19684-19765 bp Feature: domain Description: GIIM Note: maturase Location: 19684-19765 bp Feature: gene Location: 20172-20720 bp Feature: domain Description: LemA Location: 20181-20712 bp Feature: domain Description: LemA Location: 2 0181-2 0712 bp Feature: gene Location: 20720-22405 bp Feature: domain Description: DUF2207 Location: 20801-22001 bp Feature: domain Description: DUF2 2 07 Location: 2 0801-2 2 001 bp Feature: domain Description: DUF2207 Location: 22046-22214 bp Feature: domain Description: DUF2 2 07 Location: 2 2 046-2 2 2 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplI (PRK00137), PRK05748 (replicative DNA helicase; Provisional), RVT-GII, GIIM (pfam08388), LemA (pfam04011), DUF2207 (pfam09972)