myRT

myRT report for GCA_001405955.1_14207_7_3

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Seq: CZAI01000002.1 Bacteroides caccae strain 2789STDY5834880 genome assembly, contig: SCcontig000002, whole genome shotgun sequence (775008 bp)
Overview 1 RT 1: 264519-267998 bp Neighborhood of RT #1 [264519, 268027] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 264519-264812 bp Feature: gene Location: 265011-265289 bp Feature: gene Location: 265252-266673 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 265627-266353 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 265627-266353 bp Feature: gene Location: 266688-267095 bp Feature: domain Description: Avd_like Location: 266721-267030 bp Feature: domain Description: Avd_like Location: 266721 -267030 bp Feature: gene Location: 267242-268027 bp Feature: domain Description: DUF1566 Location: 267749-267998 bp Feature: domain Description: DUF1 566 Location: 267749-267998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: CZAI01000007.1 Bacteroides caccae strain 2789STDY5834880 genome assembly, contig: SCcontig000007, whole genome shotgun sequence (333710 bp)
Overview 1 RT 1: 115831-129649 bp 2 RT 2: 308365-319696 bp Neighborhood of RT #1 [115831, 129765] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Neighborhood of RT #2 [308365, 319752] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs XerC Feature: gene Location: 115831-118020 bp Feature: domain Description: GlnA3 Location: 115903-118018 bp Feature: domain Description: GlnA3 Location: 115903-118018 bp Feature: gene Location: 118465-120576 bp Feature: gene Location: 120779-121909 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 121100-121652 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 1100-12 1652 bp Feature: gene Location: 121906-127857 bp Feature: domain Description: DUF4011 Location: 123121-123634 bp Feature: domain Description: DUF4011 Location: 12 312 1-12 3634 bp Feature: domain Description: DEXXQc_SF1 Location: 123973-124588 bp Feature: domain Description: DEXXQc_SF1 Location: 12 3973-12 4588 bp Feature: domain Description: DEXXQc_SF1 Location: 125218-126160 bp Feature: domain Description: DEXXQc_SF1 Location: 12 52 18-12 6160 bp Feature: domain Description: TIGR00376 Location: 126289-126682 bp Feature: domain Description: TIGR00376 Location: 12 62 89-12 6682 bp Feature: domain Description: MTES_1575 Location: 126832-127117 bp Feature: domain Description: MTES_1575 Location: 12 6832 -12 7117 bp Feature: domain Description: DUF3320 Location: 127366-127507 bp Feature: domain Description: DUF332 0 Location: 12 7366-12 7507 bp Feature: gene Location: 127969-129765 bp Feature: domain Description: rpsA Location: 128035-129649 bp Feature: domain Description: rpsA Location: 12 8035-12 9649 bp Feature: gene Location: 308365-309522 bp Feature: gene Location: 309532-316320 bp Feature: domain Description: Laminin_G_3 Location: 311968-312349 bp Feature: domain Description: Laminin_G_3 Location: 311968-312 349 bp Feature: domain Description: CotH Location: 312613-313657 bp Feature: domain Description: CotH Location: 312 613-313657 bp Feature: domain Description: LRR_AMN1 Location: 314074-314539 bp Feature: domain Description: LRR_AMN1 Location: 314074-314539 bp Feature: gene Location: 316754-318049 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 316964-317642 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 316964-317642 bp Feature: gene Location: 318051-318545 bp Feature: gene Location: 318586-319752 bp Feature: domain Description: XerC Location: 318886-319696 bp Feature: domain Description: XerC Location: 318886-319696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717), Laminin_G_3 (pfam13385), CotH (pfam08757)
LRR_AMN1 (sd00034), RVT-DGRs, XerC (COG4973)

Seq: CZAI01000010.1 Bacteroides caccae strain 2789STDY5834880 genome assembly, contig: SCcontig000010, whole genome shotgun sequence (161892 bp)
Overview 1 RT 1: 14090-20772 bp Neighborhood of RT #1 [14090, 20777] Bac_Flav_CT_J DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3875 Feature: gene Location: 14090-15109 bp Feature: domain Description: Bac_Flav_CT_J Location: 14114-15086 bp Feature: domain Description: Bac_Flav_CT_J Location: 14114-15086 bp Feature: gene Location: 15134-15766 bp Feature: domain Description: DUF4141 Location: 15152-15305 bp Feature: domain Description: DUF4141 Location: 15152-153 05 bp Feature: gene Location: 16323-18134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16587-17409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16587-17409 bp Feature: domain Description: Intron_maturas2 Location: 17484-17799 bp Feature: domain Description: Intron_maturas2 Location: 17484-17799 bp Feature: domain Description: HNHc Note: nucleases Location: 17955-18105 bp Feature: domain Description: HNHc Note: nucleases Location: 17955-18105 bp Feature: gene Location: 18681-20510 bp Feature: domain Description: Bac_Flav_CT_G Location: 18684-20496 bp Feature: domain Description: Bac_Flav_CT_G Location: 18684-20496 bp Feature: gene Location: 20607-20777 bp Feature: domain Description: DUF3875 Location: 20616-20772 bp Feature: domain Description: DUF3 875 Location: 20616-20772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF3875 (pfam12991)