myRT

myRT report for GCA_001405975.1_14207_7_84

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Seq: CYXO01000004.1 Dorea longicatena strain 2789STDY5834961 genome assembly, contig: SCcontig000004, whole genome shotgun sequence (182659 bp)
Overview 1 RT 1: 36730-40759 bp Neighborhood of RT #1 [36730, 40759] DUF4317 RVT-DGRs Avd_like Feature: gene Location: 36730-37311 bp Feature: gene Location: 37321-38448 bp Ori: CUM87098.1 Feature: domain Description: DUF4317 Location: 37327-38434 bp Feature: domain Description: DUF431 7 Location: 37327-38434 bp Feature: gene Location: 38564-39595 bp Ori: CUM87115.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38759-39362 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38759-39362 bp Feature: gene Location: 39789-40160 bp Ori: CUM87139.1 Feature: domain Description: Avd_like Location: 39813-40143 bp Feature: domain Description: Avd_like Location: 3981 3-401 43 bp Feature: gene Location: 40160-40759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4317 (pfam14199), RVT-DGRs, Avd_like (cd16376)

Seq: CYXO01000030.1 Dorea longicatena strain 2789STDY5834961 genome assembly, contig: SCcontig000030, whole genome shotgun sequence (26794 bp)
Overview 1 RT 1: 3249-11345 bp Neighborhood of RT #1 [3249, 12526] RVT-UG24 AAA_15 TOPRIM_OLD UvrD Feature: gene Location: 3249-4121 bp Feature: gene Location: 4146-4673 bp Feature: gene Location: 4670-8248 bp Ori: CUN27107.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 5216-5720 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 52 16-572 0 bp Feature: gene Location: 8445-10580 bp Ori: CUN27116.1 Feature: domain Description: AAA_15 Location: 8448-9699 bp Feature: domain Description: AAA_15 Location: 8448-9699 bp Feature: domain Description: TOPRIM_OLD Location: 9888-10137 bp Feature: domain Description: TOPRIM_OLD Location: 9888-10137 bp Feature: gene Location: 10565-12526 bp Ori: CUN27123.1 Gene: uvrD_2 Feature: domain Description: UvrD Location: 10601-11345 bp Feature: domain Description: UvrD Location: 10601-11345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG24, AAA_15 (pfam13175), TOPRIM_OLD (cd01026), UvrD (COG0210)

Seq: CYXO01000011.1 Dorea longicatena strain 2789STDY5834961 genome assembly, contig: SCcontig000011, whole genome shotgun sequence (101812 bp)
Overview 1 RT 1: 37517-41044 bp Neighborhood of RT #1 [37517, 41133] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 37517-38659 bp Ori: CUN09989.1 Feature: domain Description: PHA00653 Location: 37640-38657 bp Feature: domain Description: PHA00653 Location: 3 7640-3 8657 bp Feature: gene Location: 38700-39056 bp Ori: CUN10005.1 Feature: domain Description: Avd_like Location: 38730-39036 bp Feature: domain Description: Avd_like Location: 3 873 0-3 903 6 bp Feature: gene Location: 39383-40444 bp Ori: CUN10023.1 Gene: ltrA Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39623-40241 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 9623 -40241 bp Feature: gene Location: 40469-40648 bp Feature: gene Location: 40651-41133 bp Ori: CUN10061.1 Feature: domain Description: Phage_holin_4_1 Location: 40684-41044 bp Feature: domain Description: Phage_holin_4_1 Location: 40684-41044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105)