myRT

myRT report for GCA_001406015.1_14207_7_71

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Seq: CZBM01000018.1 Parabacteroides distasonis strain 2789STDY5834948 genome assembly, contig: SCcontig000018, whole genome shotgun sequence (126298 bp)
Overview 1 RT 1: 85577-88893 bp Neighborhood of RT #1 [85577, 88985] COG3943 RVT-Retrons HTH_17 Feature: gene Location: 85577-85951 bp Feature: domain Description: COG3943 Location: 85628-85883 bp Feature: domain Description: COG3943 Location: 85628-85883 bp Feature: gene Location: 86134-87021 bp Feature: gene Location: 87068-87919 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 87233-87755 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 87233-87755 bp Feature: gene Location: 87946-88161 bp Feature: gene Location: 88620-88985 bp Feature: domain Description: HTH_17 Location: 88755-88893 bp Feature: domain Description: HTH_1 7 Location: 88755-88893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, HTH_17 (pfam12728)

Seq: CZBM01000010.1 Parabacteroides distasonis strain 2789STDY5834948 genome assembly, contig: SCcontig000010, whole genome shotgun sequence (187630 bp)
Overview 1 RT 1: 89913-98149 bp Neighborhood of RT #1 [89913, 98149] Prophage_tail ChtBD3 KOG3544 Peptidase_S74 RVT-DGRs Feature: gene Location: 89913-93386 bp Feature: domain Description: Prophage_tail Location: 90183-91347 bp Feature: domain Description: Prophage_tail Location: 90183-91347 bp Feature: domain Description: ChtBD3 Location: 92166-92280 bp Feature: domain Description: ChtBD3 Location: 92 166-92 2 80 bp Feature: domain Description: KOG3544 Location: 92298-92412 bp Feature: domain Description: KOG3544 Location: 92 2 98-92 412 bp Feature: domain Description: Peptidase_S74 Location: 93081-93234 bp Feature: domain Description: Peptidase_S74 Location: 93081-932 34 bp Feature: gene Location: 93398-93793 bp Feature: gene Location: 93850-95364 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 94048-94867 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 94048-94867 bp Feature: gene Location: 95858-97330 bp Feature: gene Location: 97358-98149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prophage_tail (pfam06605), ChtBD3 (smart00495), KOG3544 (KOG3544, Collagens (type IV and type XIII), and related proteins ), Peptidase_S74 (pfam13884), RVT-DGRs

Seq: CZBM01000003.1 Parabacteroides distasonis strain 2789STDY5834948 genome assembly, contig: SCcontig000003, whole genome shotgun sequence (366126 bp)
Overview 1 RT 1: 79717-89728 bp Neighborhood of RT #1 [79717, 89742] Glug Glug Glug Glug Cadherin-like RVT-GII GIIM Orn_aminotrans Feature: gene Location: 79717-83754 bp Feature: domain Description: Glug Location: 81256-81304 bp Feature: domain Description: Glug Location: 81256-813 04 bp Feature: domain Description: Glug Location: 81436-81508 bp Feature: domain Description: Glug Location: 8143 6-81508 bp Feature: domain Description: Glug Location: 81532-81625 bp Feature: domain Description: Glug Location: 8153 2-81625 bp Feature: domain Description: Glug Location: 81652-81721 bp Feature: domain Description: Glug Location: 81652-81721 bp Feature: gene Location: 83756-86416 bp Feature: domain Description: Cadherin-like Location: 85133-85301 bp Feature: domain Description: Cadherin-like Location: 8513 3 -853 01 bp Feature: gene Location: 86915-88321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87257-87875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87257-87875 bp Feature: domain Description: GIIM Note: maturase Location: 87932-88151 bp Feature: domain Description: GIIM Note: maturase Location: 8793 2-88151 bp Feature: gene Location: 88332-88520 bp Feature: gene Location: 88534-89742 bp Feature: domain Description: Orn_aminotrans Location: 88546-89728 bp Feature: domain Description: Orn_aminotrans Location: 88546-89728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glug (pfam07581), Cadherin-like (pfam12733), RVT-GII, GIIM (pfam08388), Orn_aminotrans (TIGR01885)