myRT

myRT report for GCA_001406035.1_L.albaCECT5096_Spades_Prokka

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Seq: CXWC01000013.1 Labrenzia alba genome assembly L.albaCECT5096_Spades_Prokka, contig 0013, whole genome shotgun sequence (623365 bp)
Overview 1 RT 1: 481404-488673 bp Neighborhood of RT #1 [481404, 488732] PRK05298 SLATT_5 RVT-UG13 VOC_like MFS_MefA_like Feature: gene Location: 481404-484550 bp Ori: CTQ77372.1 Gene: uvrB Feature: domain Description: PRK05298 Location: 482220-484188 bp Feature: domain Description: PRK05298 Location: 482220-4841 88 bp Feature: gene Location: 484557-485147 bp Ori: CTQ77376.1 Feature: domain Description: SLATT_5 Location: 484572-485124 bp Feature: domain Description: SLATT_5 Location: 484572-4851 24 bp Feature: gene Location: 485147-486577 bp Ori: CTQ77378.1 Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 485573-486065 bp Feature: RT Description: RVT-UG1 3 Note: UG1 3 RT Location: 485573-486065 bp Feature: gene Location: 487120-487494 bp Ori: CTQ77381.1 Feature: domain Description: VOC_like Location: 487150-487483 bp Feature: domain Description: VOC_like Location: 4871 50-487483 bp Feature: gene Location: 487521-488732 bp Ori: CTQ77383.1 Feature: domain Description: MFS_MefA_like Location: 487566-488673 bp Feature: domain Description: MFS_MefA_like Location: 487566-488673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05298 (excinuclease ABC subunit UvrB), SLATT_5 (pfam18160), RVT-UG13, VOC_like (cd16355), MFS_MefA_like (cd06173)

Seq: CXWC01000011.1 Labrenzia alba genome assembly L.albaCECT5096_Spades_Prokka, contig 0011, whole genome shotgun sequence (1198148 bp)
Overview 1 RT 1: 15839-19819 bp Neighborhood of RT #1 [15839, 19983] Arm-DNA-bind_3 RVT-GII HTH_32 Feature: gene Location: 15839-16645 bp Ori: CTQ72205.1 Gene: intS Feature: domain Description: Arm-DNA-bind_3 Location: 16070-16328 bp Feature: domain Description: Arm-DNA-bind_3 Location: 16070-1632 8 bp Feature: gene Location: 16880-17263 bp Feature: gene Location: 17582-18889 bp Ori: CTQ72210.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17882-18602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17882 -18602 bp Feature: gene Location: 19072-19248 bp Feature: gene Location: 19492-19983 bp Ori: CTQ72216.1 Feature: domain Description: HTH_32 Location: 19597-19819 bp Feature: domain Description: HTH_32 Location: 19597-19819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-GII, HTH_32 (pfam13565)