myRT

myRT report for GCA_001406075.1_14207_7_68

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Seq: CZBI01000002.1 Bacteroides thetaiotaomicron strain 2789STDY5834945 genome assembly, contig: SCcontig000002, whole genome shotgun sequence (1072632 bp)
Overview 1 RT 1: 601202-612547 bp Neighborhood of RT #1 [601202, 612585] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 601202-602368 bp Feature: gene Location: 602378-609166 bp Feature: domain Description: Laminin_G_3 Location: 604814-605195 bp Feature: domain Description: Laminin_G_3 Location: 60481 4-6051 95 bp Feature: domain Description: pfam08757 Location: 605990-606314 bp Feature: domain Description: pfam08757 Location: 605990-60631 4 bp Feature: domain Description: LRR_AMN1 Location: 606926-607370 bp Feature: domain Description: LRR_AMN1 Location: 606926-607370 bp Feature: gene Location: 609599-610894 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 609809-610487 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 609809-61 0487 bp Feature: gene Location: 610896-611390 bp Feature: gene Location: 611440-612585 bp Feature: domain Description: Arm-DNA-bind_5 Location: 611464-611710 bp Feature: domain Description: Arm-DNA-bind_5 Location: 61 1 464-61 1 71 0 bp Feature: domain Description: Phage_int_SAM_5 Location: 611749-612034 bp Feature: domain Description: Phage_int_SAM_5 Location: 61 1 749-61 2034 bp Feature: domain Description: INTN1_C_like Location: 612073-612547 bp Feature: domain Description: INTN1 _C_like Location: 61 2073-61 2547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: CZBI01000001.1 Bacteroides thetaiotaomicron strain 2789STDY5834945 genome assembly, contig: SCcontig000001, whole genome shotgun sequence (1695367 bp)
Overview 1 RT 1: 204035-212111 bp 2 RT 2: 700205-708467 bp Neighborhood of RT #1 [204035, 212146] KOG2233 Alpha_L_fucos RVT-GII Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Neighborhood of RT #2 [700205, 708467] RVT-Retrons DUF5106 Thioredoxin_8 Feature: gene Location: 204035-206152 bp Feature: domain Description: KOG2233 Location: 204227-206066 bp Feature: domain Description: KOG2 2 33 Location: 2 042 2 7-2 06066 bp Feature: gene Location: 206487-207872 bp Feature: domain Description: Alpha_L_fucos Location: 206562-207591 bp Feature: domain Description: Alpha_L_fucos Location: 2 06562 -2 07591 bp Feature: gene Location: 208414-209331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208705-209320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 08705-2 0932 0 bp Feature: gene Location: 210456-210572 bp Feature: gene Location: 210902-212146 bp Feature: domain Description: Arm-DNA-bind_5 Location: 210920-211151 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2 1092 0-2 11151 bp Feature: domain Description: Phage_int_SAM_5 Location: 211226-211508 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 112 2 6-2 11508 bp Feature: domain Description: INTN1_C_like Location: 211583-212111 bp Feature: domain Description: INTN1_C_like Location: 2 11583-2 12 111 bp Feature: gene Location: 700205-700405 bp Feature: gene Location: 700807-702993 bp Feature: gene Location: 703199-704329 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 703523-704069 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70352 3-704069 bp Feature: gene Location: 704332-705336 bp Feature: domain Description: DUF5106 Location: 704482-704899 bp Feature: domain Description: DUF5106 Location: 704482 -704899 bp Feature: domain Description: Thioredoxin_8 Location: 704986-705256 bp Feature: domain Description: Thioredoxin_8 Location: 704986-7052 56 bp Feature: gene Location: 705342-708467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG2233 (KOG2233, Alpha-N-acetylglucosaminidase ), Alpha_L_fucos (smart00812), RVT-GII, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, DUF5106 (pfam17127), Thioredoxin_8 (pfam13905)