myRT

myRT report for GCA_001406195.1_13470_2_86

Download annotations/find similar RTs

Seq: CZAC01000003.1 Dorea longicatena strain 2789STDY5834867 genome assembly, contig: SCcontig000003, whole genome shotgun sequence (264211 bp)
Overview 1 RT 1: 236477-241560 bp Neighborhood of RT #1 [236477, 241565] LexA_DNA_bind RVT_N RVT-GII GIIM HipB COG2932 XRE Feature: gene Location: 236477-236716 bp Feature: gene Location: 236729-236941 bp Ori: CUO53606.1 Gene: lexA_2 Feature: domain Description: LexA_DNA_bind Location: 236738-236927 bp Feature: domain Description: LexA_DNA_bind Location: 236738-236927 bp Feature: gene Location: 238281-239750 bp Ori: CUO53654.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 238326-238563 bp Feature: domain Description: RVT_N Location: 238326-238563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238614-239262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23861 4-239262 bp Feature: domain Description: GIIM Note: maturase Location: 239313-239547 bp Feature: domain Description: GIIM Note: maturase Location: 23931 3-239547 bp Feature: gene Location: 240577-241308 bp Ori: CUO53694.1 Feature: domain Description: HipB Location: 240589-240805 bp Feature: domain Description: HipB Location: 240589-240805 bp Feature: domain Description: COG2932 Location: 240961-241273 bp Feature: domain Description: COG2932 Location: 240961 -241 273 bp Feature: gene Location: 241365-241565 bp Ori: CUO53733.1 Feature: domain Description: XRE Location: 241377-241560 bp Feature: domain Description: XRE Location: 241 377-241 560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LexA_DNA_bind (pfam01726), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), XRE (COG1476)

Seq: CZAC01000014.1 Dorea longicatena strain 2789STDY5834867 genome assembly, contig: SCcontig000014, whole genome shotgun sequence (86760 bp)
Overview 1 RT 1: 52979-56932 bp Neighborhood of RT #1 [52979, 57396] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 FlgJ Feature: gene Location: 52979-54073 bp Ori: CUP28113.1 Gene: pkn1 Feature: domain Description: PHA00653 Location: 53072-54071 bp Feature: domain Description: PHA00653 Location: 53072 -54071 bp Feature: gene Location: 54133-54522 bp Ori: CUP28159.1 Feature: domain Description: Avd_like Location: 54193-54496 bp Feature: domain Description: Avd_like Location: 54193-54496 bp Feature: gene Location: 54878-55918 bp Ori: CUP28196.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55085-55760 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55085-55760 bp Feature: gene Location: 55992-56432 bp Ori: CUP28243.1 Feature: domain Description: Phage_holin_4_1 Location: 56028-56397 bp Feature: domain Description: Phage_holin_4_1 Location: 5602 8-56397 bp Feature: gene Location: 56452-57396 bp Ori: CUP28275.1 Gene: lytG Feature: domain Description: FlgJ Location: 56470-56932 bp Feature: domain Description: FlgJ Location: 56470-56932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), FlgJ (COG1705)

Seq: CZAC01000019.1 Dorea longicatena strain 2789STDY5834867 genome assembly, contig: SCcontig000019, whole genome shotgun sequence (46659 bp)
Overview 1 RT 1: 25089-28335 bp Neighborhood of RT #1 [25089, 28335] RVT-DGRs Feature: gene Location: 25089-25190 bp Feature: gene Location: 25183-25518 bp Feature: gene Location: 25482-26693 bp Ori: CUP44704.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25704-26526 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25704-26526 bp Feature: gene Location: 26847-27389 bp Feature: gene Location: 27433-28335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CZAC01000007.1 Dorea longicatena strain 2789STDY5834867 genome assembly, contig: SCcontig000007, whole genome shotgun sequence (178232 bp)
Overview 1 RT 1: 169288-173279 bp Neighborhood of RT #1 [169288, 173368] PHA00653 RVT-DGRs Phage_holin_4_1 Feature: gene Location: 169288-169725 bp Feature: gene Location: 169718-170860 bp Ori: CUO90003.1 Feature: domain Description: PHA00653 Location: 169841-170858 bp Feature: domain Description: PHA00653 Location: 16984 1-170858 bp Feature: gene Location: 171618-172679 bp Ori: CUO90032.1 Gene: ltrA_2 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 171846-172548 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17184 6-17254 8 bp Feature: gene Location: 172704-172883 bp Feature: gene Location: 172886-173368 bp Ori: CUO90083.1 Feature: domain Description: Phage_holin_4_1 Location: 172919-173279 bp Feature: domain Description: Phage_holin_4 _1 Location: 172919-173279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: CZAC01000002.1 Dorea longicatena strain 2789STDY5834867 genome assembly, contig: SCcontig000002, whole genome shotgun sequence (303691 bp)
Overview 1 RT 1: 297283-302430 bp Neighborhood of RT #1 [297283, 302495] RVT-GII GIIM LolD Feature: gene Location: 297283-297504 bp Feature: gene Location: 299425-299667 bp Feature: gene Location: 299786-300391 bp Ori: CUO42812.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299789-300026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299789-300026 bp Feature: domain Description: GIIM Note: maturase Location: 300107-300332 bp Feature: domain Description: GIIM Note: maturase Location: 300107-300332 bp Feature: gene Location: 301219-301401 bp Feature: gene Location: 301725-302495 bp Ori: CUO42895.1 Gene: lolD_3 Feature: domain Description: LolD Location: 301800-302430 bp Feature: domain Description: LolD Location: 301800-302430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LolD (COG1136)