myRT

myRT report for GCA_001406235.1_14207_7_41

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Seq: CZBJ01000016.1 [Ruminococcus] torques strain 2789STDY5834918 genome assembly, contig: SCcontig000016, whole genome shotgun sequence (112376 bp)
Overview 1 RT 1: 14974-18680 bp Neighborhood of RT #1 [14974, 19159] RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 14974-15294 bp Feature: gene Location: 15330-15884 bp Feature: gene Location: 16026-17246 bp Ori: CUQ32299.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16230-16953 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 6230-1 6953 bp Feature: gene Location: 17623-18054 bp Ori: CUQ32317.1 Feature: domain Description: Avd_like Location: 17683-17992 bp Feature: domain Description: Avd_like Location: 1 7683-1 7992 bp Feature: gene Location: 18113-19159 bp Ori: CUQ32335.1 Feature: domain Description: FGE-sulfatase Location: 18362-18680 bp Feature: domain Description: FGE-sulfatase Location: 1 8362-1 8680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: CZBJ01000153.1 [Ruminococcus] torques strain 2789STDY5834918 genome assembly, contig: SCcontig000153, whole genome shotgun sequence (4994 bp)
Overview 1 RT 1: 128-4011 bp Neighborhood of RT #1 [128, 4886] VirB4_CagE RVT-GII Feature: gene Location: 128-2239 bp Ori: CUQ64411.1 Feature: domain Description: VirB4_CagE Location: 941-2135 bp Feature: domain Description: VirB4_CagE Location: 941-2 135 bp Feature: gene Location: 2913-4886 bp Ori: CUQ64412.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3273-4011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 73-4011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4_CagE (TIGR00929), RVT-GII

Seq: CZBJ01000232.1 [Ruminococcus] torques strain 2789STDY5834918 genome assembly, contig: SCcontig000232, whole genome shotgun sequence (947 bp)
Overview 1 RT 1: 122-740 bp Neighborhood of RT #1 [122, 943] RVT-GII GIIM Feature: gene Location: 122-943 bp Ori: CUQ64701.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128-455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128-455 bp Feature: domain Description: GIIM Note: maturase Location: 506-740 bp Feature: domain Description: GIIM Note: maturase Location: 506-740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CZBJ01000051.1 [Ruminococcus] torques strain 2789STDY5834918 genome assembly, contig: SCcontig000051, whole genome shotgun sequence (53351 bp)
Overview 1 RT 1: 51746-53201 bp Neighborhood of RT #1 [51746, 53248] RVT-GII GIIM group_II_RT_mat Feature: gene Location: 51746-51961 bp Feature: gene Location: 52000-52128 bp Feature: gene Location: 52345-52950 bp Ori: CUQ58502.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52348-52585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5234 8-52585 bp Feature: domain Description: GIIM Note: maturase Location: 52669-52888 bp Feature: domain Description: GIIM Note: maturase Location: 52669-52888 bp Feature: gene Location: 52988-53248 bp Ori: CUQ58506.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 53108-53201 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 53108-53201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: CZBJ01000007.1 [Ruminococcus] torques strain 2789STDY5834918 genome assembly, contig: SCcontig000007, whole genome shotgun sequence (167752 bp)
Overview 1 RT 1: 165443-167671 bp Neighborhood of RT #1 [165443, 167739] HTH_17 sigma70-ECF RVT-GII GIIM Feature: gene Location: 165443-165631 bp Ori: CUQ04558.1 Feature: domain Description: HTH_17 Location: 165464-165611 bp Feature: domain Description: HTH_17 Location: 165 464-165 611 bp Feature: gene Location: 165714-166190 bp Ori: CUQ04577.1 Feature: domain Description: sigma70-ECF Location: 165795-166176 bp Feature: domain Description: sigma70-ECF Location: 165 795 -166176 bp Feature: gene Location: 166450-167739 bp Ori: CUQ04606.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166741-167374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166741-167374 bp Feature: domain Description: GIIM Note: maturase Location: 167455-167671 bp Feature: domain Description: GIIM Note: maturase Location: 16745 5 -167671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), sigma70-ECF (TIGR02937), RVT-GII, GIIM (pfam08388)

Seq: CZBJ01000064.1 [Ruminococcus] torques strain 2789STDY5834918 genome assembly, contig: SCcontig000064, whole genome shotgun sequence (46227 bp)
Overview 1 RT 1: 40686-45654 bp Neighborhood of RT #1 [40686, 45654] DUF3801 RVT-GII Intron_maturas2 HNHc VirD4 Feature: gene Location: 40686-41162 bp Ori: CUQ61091.1 Feature: domain Description: DUF3801 Location: 40752-41136 bp Feature: domain Description: DUF3801 Location: 40752-41136 bp Feature: gene Location: 41159-41659 bp Feature: gene Location: 42219-44036 bp Ori: CUQ61098.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42483-43302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42483-43302 bp Feature: domain Description: Intron_maturas2 Location: 43374-43677 bp Feature: domain Description: Intron_maturas2 Location: 43374-436 77 bp Feature: domain Description: HNHc Note: nucleases Location: 43857-44001 bp Feature: domain Description: HNHc Note: nucleases Location: 43857-44001 bp Feature: gene Location: 44145-45449 bp Ori: CUQ61101.1 Gene: traG_6 Feature: domain Description: VirD4 Location: 44160-45309 bp Feature: domain Description: VirD4 Location: 4416 0-45309 bp Feature: gene Location: 45442-45654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505)

Seq: CZBJ01000054.1 [Ruminococcus] torques strain 2789STDY5834918 genome assembly, contig: SCcontig000054, whole genome shotgun sequence (52010 bp)
Overview 1 RT 1: 35818-41598 bp Neighborhood of RT #1 [35818, 41618] Lipase_GDSL_2 RVT-DGRs COG2442 Feature: gene Location: 35818-37752 bp Ori: CUQ59100.1 Feature: domain Description: Lipase_GDSL_2 Location: 37108-37681 bp Feature: domain Description: Lipase_GDSL_2 Location: 37 108-37 681 bp Feature: gene Location: 37845-39599 bp Feature: gene Location: 40092-41183 bp Ori: CUQ59111.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40254-40986 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40254-40986 bp Feature: gene Location: 41140-41466 bp Feature: gene Location: 41466-41618 bp Ori: CUQ59119.1 Feature: domain Description: COG2442 Location: 41496-41598 bp Feature: domain Description: COG2442 Location: 41496-41598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lipase_GDSL_2 (pfam13472), RVT-DGRs, COG2442 (Uncharacterized conserved protein, DUF433 family )

Seq: CZBJ01000002.1 [Ruminococcus] torques strain 2789STDY5834918 genome assembly, contig: SCcontig000002, whole genome shotgun sequence (240918 bp)
Overview 1 RT 1: 28515-31112 bp Neighborhood of RT #1 [28515, 31114] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Feature: gene Location: 28515-28733 bp Ori: CUP62840.1 Feature: domain Description: Phage_holin_Dp1 Location: 28524-28710 bp Feature: domain Description: Phage_holin_Dp1 Location: 28 524-28 710 bp Feature: gene Location: 28720-29058 bp Feature: gene Location: 29058-30284 bp Ori: CUP62911.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29256-30075 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29256-30075 bp Feature: gene Location: 30492-30977 bp Feature: gene Location: 30977-31114 bp Ori: CUP62997.1 Feature: domain Description: Phage_XkdX Location: 30995-31112 bp Feature: domain Description: Phage_XkdX Location: 30995-31112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_Dp1 (pfam16938), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: CZBJ01000025.1 [Ruminococcus] torques strain 2789STDY5834918 genome assembly, contig: SCcontig000025, whole genome shotgun sequence (82295 bp)
Overview 1 RT 1: 29023-43653 bp 2 RT 2: 51227-55705 bp Neighborhood of RT #1 [29023, 43691] NlpD Spr RVT-GII HNHc TraC-F-type IME4 SpoVG RVT-GII Intron_maturas2 HNHc SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Neighborhood of RT #2 [51227, 55705] YozG RVT-GII HNHc Maff2 Feature: gene Location: 29023-31695 bp Ori: CUQ45140.1 Gene: iap_2 Feature: domain Description: NlpD Location: 30034-31210 bp Feature: domain Description: NlpD Location: 30034-31210 bp Feature: domain Description: Spr Location: 31324-31672 bp Feature: domain Description: Spr Location: 31324-31672 bp Feature: gene Location: 31731-31940 bp Feature: gene Location: 32120-34003 bp Ori: CUQ45162.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32456-33173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32456-33173 bp Feature: domain Description: HNHc Note: nucleases Location: 33755-33893 bp Feature: domain Description: HNHc Note: nucleases Location: 33755-3389 3 bp Feature: gene Location: 34010-34105 bp Feature: gene Location: 34736-36988 bp Ori: CUQ45184.1 Feature: domain Description: TraC-F-type Location: 35630-36977 bp Feature: domain Description: TraC-F-type Location: 35630-369 77 bp Feature: gene Location: 37351-37908 bp Ori: CUQ45200.1 Feature: domain Description: IME4 Location: 37375-37885 bp Feature: domain Description: IME4 Location: 37375-37885 bp Feature: gene Location: 37908-38351 bp Ori: CUQ45210.1 Gene: spoVG_2 Feature: domain Description: SpoVG Location: 37971-38202 bp Feature: domain Description: SpoVG Location: 379 71-38202 bp Feature: gene Location: 38774-40606 bp Ori: CUQ45220.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39038-39869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39 038-39 869 bp Feature: domain Description: Intron_maturas2 Location: 39941-40256 bp Feature: domain Description: Intron_maturas2 Location: 39 9 41-40256 bp Feature: domain Description: HNHc Note: nucleases Location: 40403-40577 bp Feature: domain Description: HNHc Note: nucleases Location: 40403-40577 bp Feature: gene Location: 41182-41847 bp Feature: gene Location: 42027-43691 bp Ori: CUQ45240.1 Feature: domain Description: SR_TndX_transposase Location: 42090-42501 bp Feature: domain Description: SR_TndX_transposase Location: 4209 0-42501 bp Feature: domain Description: Recombinase Location: 42603-42987 bp Feature: domain Description: Recombinase Location: 42603-429 87 bp Feature: domain Description: Zn_ribbon_recom Location: 43020-43200 bp Feature: domain Description: Zn_ribbon_recom Location: 43020-43200 bp Feature: domain Description: DUF4368 Location: 43497-43653 bp Feature: domain Description: DUF4368 Location: 4349 7-43653 bp Feature: gene Location: 51227-51754 bp Feature: gene Location: 51976-52185 bp Ori: CUQ45353.1 Feature: domain Description: YozG Location: 51988-52180 bp Feature: domain Description: YozG Location: 519 88-52180 bp Feature: gene Location: 52517-54391 bp Ori: CUQ45361.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52844-53582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52844-53582 bp Feature: domain Description: HNHc Note: nucleases Location: 54128-54278 bp Feature: domain Description: HNHc Note: nucleases Location: 54128-54278 bp Feature: gene Location: 55110-55241 bp Ori: CUQ45370.1 Feature: domain Description: Maff2 Location: 55113-55227 bp Feature: domain Description: Maff2 Location: 55113-55227 bp Feature: gene Location: 55481-55705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Spr (COG0791), RVT-GII, HNHc (smart00507), TraC-F-type (TIGR02746), IME4 (COG4725), SpoVG (pfam04026), Intron_maturas2 (pfam01348), SR_TndX_transposase (cd03770), Recombinase (pfam07508)
Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), YozG (COG3655), Maff2 (pfam12750)