myRT

myRT report for GCA_001406355.1_13414_6_53

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Seq: CYYL01000001.1 Faecalibacterium prausnitzii strain 2789STDY5608869 genome assembly, contig: SCcontig000001, whole genome shotgun sequence (522669 bp)
Overview 1 RT 1: 417401-422337 bp Neighborhood of RT #1 [417401, 422337] RVT-DGRs Feature: gene Location: 417401-417541 bp Feature: gene Location: 417541-417873 bp Feature: gene Location: 417870-419111 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 418164-418758 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41 81 64-41 8758 bp Feature: gene Location: 419632-421356 bp Feature: gene Location: 421432-422337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CYYL01000002.1 Faecalibacterium prausnitzii strain 2789STDY5608869 genome assembly, contig: SCcontig000002, whole genome shotgun sequence (318078 bp)
Overview 1 RT 1: 115430-119957 bp Neighborhood of RT #1 [115430, 119957] ChiA1_BD ChiA1_BD RVT-DGRs Avd_like Feature: gene Location: 115430-115939 bp Feature: domain Description: ChiA1_BD Location: 115604-115736 bp Feature: domain Description: ChiA1_BD Location: 115604-115736 bp Feature: domain Description: ChiA1_BD Location: 115793-115871 bp Feature: domain Description: ChiA1_BD Location: 115793-115871 bp Feature: gene Location: 115932-117659 bp Feature: gene Location: 117706-118956 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 118003-118708 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 118003-118708 bp Feature: gene Location: 119315-119674 bp Feature: domain Description: Avd_like Location: 119366-119651 bp Feature: domain Description: Avd_like Location: 119366-119651 bp Feature: gene Location: 119640-119957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChiA1_BD (cd12214), RVT-DGRs, Avd_like (cd16376)

Seq: CYYL01000003.1 Faecalibacterium prausnitzii strain 2789STDY5608869 genome assembly, contig: SCcontig000003, whole genome shotgun sequence (247755 bp)
Overview 1 RT 1: 241134-246193 bp Neighborhood of RT #1 [241134, 247263] DUF1934 argS RVT-Retrons AAA_15 Feature: gene Location: 241134-241592 bp Feature: domain Description: DUF1934 Location: 241203-241569 bp Feature: domain Description: DUF193 4 Location: 241203 -241569 bp Feature: gene Location: 241762-243576 bp Feature: domain Description: argS Location: 241822-243574 bp Feature: domain Description: argS Location: 241822-243 574 bp Feature: gene Location: 243959-245002 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 244064-244631 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 244064-24463 1 bp Feature: gene Location: 245224-247263 bp Feature: domain Description: AAA_15 Location: 245227-246193 bp Feature: domain Description: AAA_15 Location: 245227-246193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1934 (pfam09148), argS (TIGR00456), RVT-Retrons, AAA_15 (pfam13175)

Seq: CYYL01000013.1 Faecalibacterium prausnitzii strain 2789STDY5608869 genome assembly, contig: SCcontig000013, whole genome shotgun sequence (86190 bp)
Overview 1 RT 1: 60-10798 bp Neighborhood of RT #1 [60, 10908] MutS COG4646 RVT-GII HNHc COG4646 SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 FCS FCS Feature: gene Location: 60-221 bp Feature: gene Location: 308-5632 bp Feature: domain Description: MutS Location: 1892-2126 bp Feature: domain Description: MutS Location: 1892-2126 bp Feature: domain Description: COG4646 Location: 3596-5618 bp Feature: domain Description: COG4 64 6 Location: 3596-5618 bp Feature: gene Location: 6362-8248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6656-7370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6656-7370 bp Feature: domain Description: HNHc Note: nucleases Location: 8000-8171 bp Feature: domain Description: HNHc Note: nucleases Location: 8000-8171 bp Feature: gene Location: 8475-8762 bp Feature: domain Description: COG4646 Location: 8478-8736 bp Feature: domain Description: COG4 64 6 Location: 84 78-8736 bp Feature: gene Location: 8812-10908 bp Feature: domain Description: SR_TndX_transposase Location: 8836-9253 bp Feature: domain Description: SR_TndX_transposase Location: 8836-9253 bp Feature: domain Description: Recombinase Location: 9358-9718 bp Feature: domain Description: Recombinase Location: 9358-9718 bp Feature: domain Description: Zn_ribbon_recom Location: 9766-9946 bp Feature: domain Description: Zn_ribbon_recom Location: 9766-994 6 bp Feature: domain Description: DUF4368 Location: 10222-10420 bp Feature: domain Description: DUF4 368 Location: 10222-104 20 bp Feature: domain Description: FCS Location: 10573-10657 bp Feature: domain Description: FCS Location: 10573-10657 bp Feature: domain Description: FCS Location: 10711-10798 bp Feature: domain Description: FCS Location: 10711-10798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), COG4646 (Adenine-specific DNA methylase, N12 class ), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), FCS (LOAD_FCS)

Seq: CYYL01000024.1 Faecalibacterium prausnitzii strain 2789STDY5608869 genome assembly, contig: SCcontig000024, whole genome shotgun sequence (22324 bp)
Overview 1 RT 1: 2709-8736 bp Neighborhood of RT #1 [2709, 8756] DUF2007 DUF4300 RVT-Retrons PleD PleD RpfG Feature: gene Location: 2709-2957 bp Feature: domain Description: DUF2007 Location: 2739-2946 bp Feature: domain Description: DUF2007 Location: 2739-2946 bp Feature: gene Location: 3099-4007 bp Feature: domain Description: DUF4300 Location: 3207-3966 bp Feature: domain Description: DUF4300 Location: 3207-3966 bp Feature: gene Location: 5236-6210 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5368-5983 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 368-5 983 bp Feature: gene Location: 6817-7908 bp Feature: domain Description: PleD Location: 7153-7666 bp Feature: domain Description: PleD Location: 715 3-7666 bp Feature: domain Description: PleD Location: 7702-7840 bp Feature: domain Description: PleD Location: 7702-7840 bp Feature: gene Location: 7860-8756 bp Feature: domain Description: RpfG Location: 7863-8736 bp Feature: domain Description: RpfG Location: 7863-8736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2007 (pfam09413), DUF4300 (pfam14133), RVT-Retrons, PleD (COG3706), RpfG (COG3437)