myRT

myRT report for GCA_001406395.1_13470_2_85

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Seq: CYZK01000005.1 Coprococcus comes strain 2789STDY5834866 genome assembly, contig: SCcontig000005, whole genome shotgun sequence (191101 bp)
Overview 1 RT 1: 146995-150875 bp Neighborhood of RT #1 [146995, 150898] HTH_XRE RVT-Retrons met_A_Alw26 met_A_Alw26 BsuBI_PstI_RE_N BsuBI_PstI_RE Feature: gene Location: 146995-147153 bp Feature: gene Location: 147200-147499 bp Feature: domain Description: HTH_XRE Location: 147206-147362 bp Feature: domain Description: HTH_XRE Location: 1 47206-1 47362 bp Feature: gene Location: 147492-148478 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147633-148176 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 47633-1 481 76 bp Feature: gene Location: 148504-149988 bp Feature: domain Description: met_A_Alw26 Location: 148570-148981 bp Feature: domain Description: met_A_Alw26 Location: 1 48570-1 48981 bp Feature: domain Description: met_A_Alw26 Location: 149020-149914 bp Feature: domain Description: met_A_Alw26 Location: 1 49020-1 4991 4 bp Feature: gene Location: 149981-150898 bp Feature: domain Description: BsuBI_PstI_RE_N Location: 149987-150383 bp Feature: domain Description: BsuBI_PstI_RE_N Location: 1 49987-1 50383 bp Feature: domain Description: BsuBI_PstI_RE Location: 150422-150875 bp Feature: domain Description: BsuBI_PstI_RE Location: 1 50422-1 50875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, met_A_Alw26 (TIGR02987), BsuBI_PstI_RE_N (pfam17728), BsuBI_PstI_RE (pfam06616)

Seq: CYZK01000007.1 Coprococcus comes strain 2789STDY5834866 genome assembly, contig: SCcontig000007, whole genome shotgun sequence (145752 bp)
Overview 1 RT 1: 93998-99086 bp Neighborhood of RT #1 [93998, 99086] XRE HipB COG2932 RVT_N RVT-GII GIIM LexA_DNA_bind Feature: gene Location: 93998-94198 bp Feature: domain Description: XRE Location: 94010-94193 bp Feature: domain Description: XRE Location: 94010-94193 bp Feature: gene Location: 94255-94986 bp Feature: domain Description: HipB Location: 94267-94483 bp Feature: domain Description: HipB Location: 942 67-94483 bp Feature: domain Description: COG2932 Location: 94639-94951 bp Feature: domain Description: COG2 932 Location: 94639-94951 bp Feature: gene Location: 95813-97282 bp Feature: RT Description: RVT_N Location: 95858-96095 bp Feature: RT Description: RVT_N Location: 95858-96095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96146-96794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96146-96794 bp Feature: domain Description: GIIM Note: maturase Location: 96845-97079 bp Feature: domain Description: GIIM Note: maturase Location: 96845-97079 bp Feature: gene Location: 98622-98834 bp Feature: domain Description: LexA_DNA_bind Location: 98631-98820 bp Feature: domain Description: LexA_DNA_bind Location: 98631-9882 0 bp Feature: gene Location: 98847-99086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XRE (COG1476), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LexA_DNA_bind (pfam01726)

Seq: CYZK01000004.1 Coprococcus comes strain 2789STDY5834866 genome assembly, contig: SCcontig000004, whole genome shotgun sequence (209287 bp)
Overview 1 RT 1: 113070-121244 bp Neighborhood of RT #1 [113070, 121249] TIGR00275 cmk RVT-GII M3B_PepF PLN02323 Feature: gene Location: 113070-114302 bp Feature: domain Description: TIGR00275 Location: 113088-114288 bp Feature: domain Description: TIGR00275 Location: 113 088-114288 bp Feature: gene Location: 114382-115038 bp Feature: domain Description: cmk Location: 114394-115033 bp Feature: domain Description: cmk Location: 1143 94-11503 3 bp Feature: gene Location: 115830-117125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116085-116775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116085-116775 bp Feature: gene Location: 118276-119949 bp Feature: domain Description: M3B_PepF Location: 118318-119938 bp Feature: domain Description: M3 B_PepF Location: 1183 18-11993 8 bp Feature: gene Location: 120284-121249 bp Feature: domain Description: PLN02323 Location: 120302-121244 bp Feature: domain Description: PLN023 23 Location: 1203 02-121244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR00275 (flavoprotein, HI0933 family), cmk (TIGR00017), RVT-GII, M3B_PepF (cd09610), PLN02323 (probable fructokinase)