myRT

myRT report for GCA_001406475.1_13470_2_83

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Seq: CYZY01000006.1 [Clostridium] symbiosum strain 2789STDY5834864 genome assembly, contig: SCcontig000006, whole genome shotgun sequence (108489 bp)
Overview 1 RT 1: 33721-46553 bp Neighborhood of RT #1 [33721, 46564] Spr RVT-GII Intron_maturas2 TraC-F-type PrgI IME4 RVT-GII Intron_maturas2 HNHc SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Feature: gene Location: 33721-35499 bp Feature: domain Description: Spr Location: 35128-35479 bp Feature: domain Description: Spr Location: 351 28-35479 bp Feature: gene Location: 35501-35719 bp Feature: gene Location: 35894-37684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36161-36974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 61 -36974 bp Feature: domain Description: Intron_maturas2 Location: 37058-37352 bp Feature: domain Description: Intron_maturas2 Location: 37058-37352 bp Feature: gene Location: 38177-40324 bp Feature: domain Description: TraC-F-type Location: 39020-40286 bp Feature: domain Description: TraC-F-type Location: 39020-40286 bp Feature: gene Location: 40305-40730 bp Feature: domain Description: PrgI Location: 40323-40596 bp Feature: domain Description: PrgI Location: 40323-40596 bp Feature: gene Location: 40731-41282 bp Feature: domain Description: IME4 Location: 40740-41277 bp Feature: domain Description: IME4 Location: 40740-41 277 bp Feature: gene Location: 41671-43503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41935-42766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 935-42766 bp Feature: domain Description: Intron_maturas2 Location: 42838-43153 bp Feature: domain Description: Intron_maturas2 Location: 42838-431 53 bp Feature: domain Description: HNHc Note: nucleases Location: 43300-43474 bp Feature: domain Description: HNHc Note: nucleases Location: 43300-43474 bp Feature: gene Location: 44079-44747 bp Feature: gene Location: 44948-46564 bp Feature: domain Description: SR_TndX_transposase Location: 44981-45401 bp Feature: domain Description: SR_TndX_transposase Location: 44981 -45401 bp Feature: domain Description: Recombinase Location: 45497-45866 bp Feature: domain Description: Recombinase Location: 45497-45866 bp Feature: domain Description: Zn_ribbon_recom Location: 45899-46076 bp Feature: domain Description: Zn_ribbon_recom Location: 45899-46076 bp Feature: domain Description: DUF4368 Location: 46352-46553 bp Feature: domain Description: DUF4368 Location: 46352-46553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), TraC-F-type (TIGR02746), PrgI (pfam12666), IME4 (COG4725), HNHc (smart00507), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)
DUF4368 (pfam14287)

Seq: CYZY01000018.1 [Clostridium] symbiosum strain 2789STDY5834864 genome assembly, contig: SCcontig000018, whole genome shotgun sequence (71531 bp)
Overview 1 RT 1: 5942-9382 bp Neighborhood of RT #1 [5942, 9870] RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 5942-6325 bp Feature: gene Location: 6329-6781 bp Feature: gene Location: 6768-7862 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6975-7701 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6975-7701 bp Feature: gene Location: 8273-8731 bp Feature: domain Description: Avd_like Location: 8369-8687 bp Feature: domain Description: Avd_like Location: 8369-8687 bp Feature: gene Location: 8815-9870 bp Feature: domain Description: FGE-sulfatase Location: 9214-9382 bp Feature: domain Description: FGE-sulfatase Location: 92 14-9382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: CYZY01000005.1 [Clostridium] symbiosum strain 2789STDY5834864 genome assembly, contig: SCcontig000005, whole genome shotgun sequence (110339 bp)
Overview 1 RT 1: 75910-79343 bp Neighborhood of RT #1 [75910, 79507] RVT-GII GIIM GIIM HTH_XRE Feature: gene Location: 75910-76359 bp Feature: gene Location: 76527-76718 bp Feature: gene Location: 77252-78598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77531-78149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7753 1-78149 bp Feature: domain Description: GIIM Note: maturase Location: 78203-78431 bp Feature: domain Description: GIIM Note: maturase Location: 78203 -7843 1 bp Feature: gene Location: 78696-79088 bp Feature: domain Description: GIIM Note: maturase Location: 78699-78921 bp Feature: domain Description: GIIM Note: maturase Location: 78699-78921 bp Feature: gene Location: 79160-79507 bp Feature: domain Description: HTH_XRE Location: 79172-79343 bp Feature: domain Description: HTH_XRE Location: 79172-793 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: CYZY01000019.1 [Clostridium] symbiosum strain 2789STDY5834864 genome assembly, contig: SCcontig000019, whole genome shotgun sequence (69516 bp)
Overview 1 RT 1: 48482-54052 bp Neighborhood of RT #1 [48482, 54060] COG1786 YuiF RVT-Retrons LysR MviM MviM Feature: gene Location: 48482-48892 bp Feature: domain Description: COG1786 Location: 48497-48881 bp Feature: domain Description: COG1786 Location: 4 84 97-4 8881 bp Feature: gene Location: 48945-50267 bp Feature: domain Description: YuiF Location: 48966-50265 bp Feature: domain Description: YuiF Location: 4 8966-50265 bp Feature: gene Location: 50565-51551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50730-51285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50730-51285 bp Feature: gene Location: 51610-52554 bp Feature: domain Description: LysR Location: 51649-52507 bp Feature: domain Description: LysR Location: 5164 9-52507 bp Feature: gene Location: 52876-54060 bp Feature: domain Description: MviM Location: 52897-53194 bp Feature: domain Description: MviM Location: 52897-53194 bp Feature: domain Description: MviM Location: 53269-54052 bp Feature: domain Description: MviM Location: 53269-54 052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1786 (Swiveling domain associated with predicted aconitase ), YuiF (COG2056), RVT-Retrons, LysR (COG0583), MviM (COG0673)

Seq: CYZY01000175.1 [Clostridium] symbiosum strain 2789STDY5834864 genome assembly, contig: SCcontig000175, whole genome shotgun sequence (1033 bp)
Overview 1 RT 1: 302-944 bp Neighborhood of RT #1 [302, 1012] RVT-GII GIIM Feature: gene Location: 302-1012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308-659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308-65 9 bp Feature: domain Description: GIIM Note: maturase Location: 737-944 bp Feature: domain Description: GIIM Note: maturase Location: 737-944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)