myRT

myRT report for GCA_001406495.1_14207_7_88

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Seq: CYYD01000046.1 [Ruminococcus] torques strain 2789STDY5834965 genome assembly, contig: SCcontig000046, whole genome shotgun sequence (33355 bp)
Overview 1 RT 1: 24027-28795 bp Neighborhood of RT #1 [24027, 28797] FlgJ CHAP CW_7 CW_7 Phage_holin_4_1 RVT-DGRs Avd_like PHA00653 PHA00653 Feature: gene Location: 24027-25310 bp Feature: domain Description: FlgJ Location: 24033-24498 bp Feature: domain Description: FlgJ Location: 24033-24498 bp Feature: domain Description: CHAP Location: 24636-24909 bp Feature: domain Description: CHAP Location: 24636-24909 bp Feature: domain Description: CW_7 Location: 25038-25152 bp Feature: domain Description: CW_7 Location: 25038-251 52 bp Feature: domain Description: CW_7 Location: 25191-25305 bp Feature: domain Description: CW_7 Location: 251 91 -25305 bp Feature: gene Location: 25329-25769 bp Feature: domain Description: Phage_holin_4_1 Location: 25377-25740 bp Feature: domain Description: Phage_holin_4_1 Location: 25377-25740 bp Feature: gene Location: 25870-26922 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26077-26752 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26077-26752 bp Feature: gene Location: 27256-27654 bp Feature: domain Description: Avd_like Location: 27322-27625 bp Feature: domain Description: Avd_like Location: 27322-27625 bp Feature: gene Location: 27697-28797 bp Feature: domain Description: PHA00653 Location: 27823-28330 bp Feature: domain Description: PHA00653 Location: 27823-28330 bp Feature: domain Description: PHA00653 Location: 28348-28795 bp Feature: domain Description: PHA00653 Location: 28348-28795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FlgJ (COG1705), CHAP (pfam05257), CW_7 (pfam08230), Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant)

Seq: CYYD01000003.1 [Ruminococcus] torques strain 2789STDY5834965 genome assembly, contig: SCcontig000003, whole genome shotgun sequence (281051 bp)
Overview 1 RT 1: 189067-197170 bp Neighborhood of RT #1 [189067, 197187] UDPGlcNAc_PPase DegQ RVT-GII GIIM PRK12353 M3B_PepF Feature: gene Location: 189067-190275 bp Feature: domain Description: UDPGlcNAc_PPase Location: 189283-190213 bp Feature: domain Description: UDPGlcNAc_PPase Location: 1892 83-1902 13 bp Feature: gene Location: 190523-192088 bp Feature: domain Description: DegQ Location: 191015-192068 bp Feature: domain Description: DegQ Location: 191015-192 068 bp Feature: gene Location: 192582-193976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192900-193524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 900-19352 4 bp Feature: domain Description: GIIM Note: maturase Location: 193581-193803 bp Feature: domain Description: GIIM Note: maturase Location: 193581-193803 bp Feature: gene Location: 194344-195276 bp Feature: domain Description: PRK12353 Location: 194353-195274 bp Feature: domain Description: PRK12 353 Location: 194353-1952 74 bp Feature: gene Location: 195382-197187 bp Feature: domain Description: M3B_PepF Location: 195493-197170 bp Feature: domain Description: M3B_PepF Location: 195493-197170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UDPGlcNAc_PPase (cd04193), DegQ (pfam08181), RVT-GII, GIIM (pfam08388), PRK12353 (putative amino acid kinase; Reviewed), M3B_PepF (cd09610)

Seq: CYYD01000027.1 [Ruminococcus] torques strain 2789STDY5834965 genome assembly, contig: SCcontig000027, whole genome shotgun sequence (74297 bp)
Overview 1 RT 1: 51091-56836 bp Neighborhood of RT #1 [51091, 56836] Uup ABC_tran_CTD RaiA Ribosom_S30AE_C RVT-GII GIIM Feature: gene Location: 51091-53133 bp Feature: domain Description: Uup Location: 51097-52693 bp Feature: domain Description: Uup Location: 51097-52693 bp Feature: domain Description: ABC_tran_CTD Location: 52918-53110 bp Feature: domain Description: ABC_tran_CTD Location: 52918-53 110 bp Feature: gene Location: 53341-53868 bp Feature: domain Description: RaiA Location: 53344-53632 bp Feature: domain Description: RaiA Location: 53 3 44-53 63 2 bp Feature: domain Description: Ribosom_S30AE_C Location: 53686-53851 bp Feature: domain Description: Ribosom_S3 0AE_C Location: 53 686-53 851 bp Feature: gene Location: 54431-55714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54641-55256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54641-55256 bp Feature: domain Description: GIIM Note: maturase Location: 55316-55544 bp Feature: domain Description: GIIM Note: maturase Location: 553 16-55544 bp Feature: gene Location: 55984-56088 bp Feature: gene Location: 56579-56836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uup (COG0488), ABC_tran_CTD (pfam16326), RaiA (COG1544), Ribosom_S30AE_C (pfam16321), RVT-GII, GIIM (pfam08388)

Seq: CYYD01000042.1 [Ruminococcus] torques strain 2789STDY5834965 genome assembly, contig: SCcontig000042, whole genome shotgun sequence (42217 bp)
Overview 1 RT 1: 9332-13939 bp Neighborhood of RT #1 [9332, 13939] RVT-DGRs SMC_prok_B Feature: gene Location: 9332-9439 bp Feature: gene Location: 9457-9723 bp Feature: gene Location: 9720-10850 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9918-10656 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9918-10656 bp Feature: gene Location: 11265-13406 bp Feature: domain Description: SMC_prok_B Location: 11346-12054 bp Feature: domain Description: SMC_prok_B Location: 1134 6-12054 bp Feature: gene Location: 13586-13939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), RVT-DGRs