myRT

myRT report for GCA_001406675.1_13414_6_19

Download annotations/find similar RTs

Seq: CYYR01000018.1 Roseburia inulinivorans strain 2789STDY5608835 genome assembly, contig: SCcontig000018, whole genome shotgun sequence (87873 bp)
Overview 1 RT 1: 102-4349 bp Neighborhood of RT #1 [102, 4513] RVT-GII GIIM RVT-GII Lactonase PrtC Feature: gene Location: 102-848 bp Ori: CUO20182.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114-483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4-483 bp Feature: domain Description: GIIM Note: maturase Location: 564-789 bp Feature: domain Description: GIIM Note: maturase Location: 564-789 bp Feature: gene Location: 814-1353 bp Ori: CUO20215.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1105-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 05-1 327 bp Feature: gene Location: 2158-3216 bp Ori: CUO20241.1 Feature: domain Description: Lactonase Location: 2182-3193 bp Feature: domain Description: Lactonase Location: 21 82-31 93 bp Feature: gene Location: 3290-4513 bp Ori: CUO20267.1 Gene: yhbU_2 Feature: domain Description: PrtC Location: 3293-4349 bp Feature: domain Description: PrtC Location: 3293-4349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Lactonase (pfam10282), PrtC (COG0826)

Seq: CYYR01000003.1 Roseburia inulinivorans strain 2789STDY5608835 genome assembly, contig: SCcontig000003, whole genome shotgun sequence (193546 bp)
Overview 1 RT 1: 113229-121770 bp 2 RT 2: 132496-137789 bp Neighborhood of RT #1 [113229, 122873] SLATT_5 RVT-UG17 SIR2-like KAP_NTPase Neighborhood of RT #2 [132496, 137821] TauB TauC RVT-GII GIIM Aldose_epim_lacX PRK06547 Feature: gene Location: 113229-114251 bp Feature: gene Location: 115033-115599 bp Ori: CUN53527.1 Feature: domain Description: SLATT_5 Location: 115048-115537 bp Feature: domain Description: SLATT_5 Location: 115048-115537 bp Feature: gene Location: 115548-116861 bp Ori: CUN53553.1 Gene: ltrA_1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 115776-116361 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 115776-116361 bp Feature: gene Location: 116930-120433 bp Ori: CUN53594.1 Feature: domain Description: SIR2-like Location: 116987-117671 bp Feature: domain Description: SIR2 -like Location: 116987-117671 bp Feature: gene Location: 120639-122873 bp Ori: CUN53618.1 Feature: domain Description: KAP_NTPase Location: 120978-121770 bp Feature: domain Description: KAP_NTPase Location: 12 0978-12 1770 bp Feature: gene Location: 132496-133314 bp Ori: CUN53933.1 Gene: cmpD_1 Feature: domain Description: TauB Location: 132553-133294 bp Feature: domain Description: TauB Location: 132 553-1332 94 bp Feature: gene Location: 133290-134075 bp Ori: CUN53965.1 Gene: ssuC_1 Feature: domain Description: TauC Location: 133317-134064 bp Feature: domain Description: TauC Location: 133317-134064 bp Feature: gene Location: 134262-135545 bp Ori: CUN53987.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134472-135087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134472 -135087 bp Feature: domain Description: GIIM Note: maturase Location: 135147-135366 bp Feature: domain Description: GIIM Note: maturase Location: 135147-135366 bp Feature: gene Location: 136239-137123 bp Ori: CUN54020.1 Feature: domain Description: Aldose_epim_lacX Location: 136248-137112 bp Feature: domain Description: Aldose_epim_lacX Location: 1362 48-137112 bp Feature: gene Location: 137210-137821 bp Ori: CUN54047.1 Feature: domain Description: PRK06547 Location: 137276-137789 bp Feature: domain Description: PRK06547 Location: 1372 76-137789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, SIR2-like (cd01406), KAP_NTPase (pfam07693), TauB (COG4525), TauC (COG0600), RVT-GII, GIIM (pfam08388), Aldose_epim_lacX (cd09024), PRK06547 (hypothetical protein; Provisional)

Seq: CYYR01000004.1 Roseburia inulinivorans strain 2789STDY5608835 genome assembly, contig: SCcontig000004, whole genome shotgun sequence (183118 bp)
Overview 1 RT 1: 87986-93015 bp Neighborhood of RT #1 [87986, 93032] Metallophos_2 HTH_XRE RVT-GII GIIM DDE_Tnp_1 DUF772 Feature: gene Location: 87986-88666 bp Ori: CUN59781.1 Feature: domain Description: Metallophos_2 Location: 87995-88373 bp Feature: domain Description: Metallophos_2 Location: 87995-883 73 bp Feature: gene Location: 88907-89359 bp Ori: CUN59809.1 Gene: immR_1 Feature: domain Description: HTH_XRE Location: 88922-89090 bp Feature: domain Description: HTH_XRE Location: 88922-89090 bp Feature: gene Location: 89534-90928 bp Ori: CUN59839.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89852-90476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89852-90476 bp Feature: domain Description: GIIM Note: maturase Location: 90533-90743 bp Feature: domain Description: GIIM Note: maturase Location: 9053 3 -90743 bp Feature: gene Location: 91712-92752 bp Ori: CUN59877.1 Feature: domain Description: DDE_Tnp_1 Location: 92132-92477 bp Feature: domain Description: DDE_Tnp_1 Location: 9213 2-92477 bp Feature: gene Location: 92736-93032 bp Ori: CUN59912.1 Feature: domain Description: DUF772 Location: 92892-93015 bp Feature: domain Description: DUF772 Location: 92892-93 015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Metallophos_2 (pfam12850), HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), DUF772 (pfam05598)

Seq: CYYR01000040.1 Roseburia inulinivorans strain 2789STDY5608835 genome assembly, contig: SCcontig000040, whole genome shotgun sequence (12690 bp)
Overview 1 RT 1: 1946-9145 bp Neighborhood of RT #1 [1946, 9591] DUF4263 HTH_XRE RVT-GII DnaA_homol_Hda DnaA_homol_Hda AAA_33 Feature: gene Location: 1946-3142 bp Ori: CUO52374.1 Feature: domain Description: DUF4263 Location: 2603-3089 bp Feature: domain Description: DUF4 263 Location: 2603-3089 bp Feature: gene Location: 3163-3531 bp Ori: CUO52401.1 Feature: domain Description: HTH_XRE Location: 3184-3352 bp Feature: domain Description: HTH_XRE Location: 3184 -3352 bp Feature: gene Location: 3907-5202 bp Ori: CUO52423.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4162-4852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 162-4 852 bp Feature: gene Location: 6023-8890 bp Ori: CUO52442.1 Feature: domain Description: DnaA_homol_Hda Location: 6581-6656 bp Feature: domain Description: DnaA_homol_Hda Location: 6581-6656 bp Feature: domain Description: DnaA_homol_Hda Location: 6962-7106 bp Feature: domain Description: DnaA_homol_Hda Location: 6962-7106 bp Feature: gene Location: 8965-9591 bp Ori: CUO52463.1 Feature: domain Description: AAA_33 Location: 9046-9145 bp Feature: domain Description: AAA_33 Location: 904 6-914 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4263 (pfam14082), HTH_XRE (smart00530), RVT-GII, DnaA_homol_Hda (TIGR03420), AAA_33 (pfam13671)