myRT

myRT report for GCA_001406755.1_14207_7_12

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Seq: CZBX01000002.1 [Ruminococcus] torques strain 2789STDY5834889 genome assembly, contig: SCcontig000002, whole genome shotgun sequence (329976 bp)
Overview 1 RT 1: 255809-259848 bp Neighborhood of RT #1 [255809, 259848] RVT-UG2 Feature: gene Location: 255809-256768 bp Feature: gene Location: 256773-256877 bp Feature: gene Location: 257389-258732 bp Ori: CUQ82803.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 257584-258424 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 257584-258424 bp Feature: gene Location: 259106-259390 bp Feature: gene Location: 259681-259848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: CZBX01000010.1 [Ruminococcus] torques strain 2789STDY5834889 genome assembly, contig: SCcontig000010, whole genome shotgun sequence (157036 bp)
Overview 1 RT 1: 55257-58967 bp Neighborhood of RT #1 [55257, 58967] RVT-GII DUF4314 Feature: gene Location: 55257-57062 bp Ori: CUQ90407.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55515-56232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55515-562 32 bp Feature: gene Location: 58361-58639 bp Ori: CUQ90409.1 Feature: domain Description: DUF4314 Location: 58379-58574 bp Feature: domain Description: DUF4314 Location: 58379-58574 bp Feature: gene Location: 58656-58967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF4314 (pfam14192)

Seq: CZBX01000009.1 [Ruminococcus] torques strain 2789STDY5834889 genome assembly, contig: SCcontig000009, whole genome shotgun sequence (157417 bp)
Overview 1 RT 1: 36106-39356 bp 2 RT 2: 71054-76474 bp Neighborhood of RT #1 [36106, 39356] XRE COG2932 RVT-GII GIIM LexA_DNA_bind Neighborhood of RT #2 [71054, 76474] DUF4314 RVT-GII KOG4768 T4SS-DNA_transf Feature: gene Location: 36106-36306 bp Ori: CUQ89643.1 Feature: domain Description: XRE Location: 36118-36301 bp Feature: domain Description: XRE Location: 3 6118-3 63 01 bp Feature: gene Location: 36363-36863 bp Ori: CUQ89647.1 Gene: umuD Feature: domain Description: COG2932 Location: 36516-36828 bp Feature: domain Description: COG293 2 Location: 3 6516-3 6828 bp Feature: gene Location: 36929-37552 bp Ori: CUQ89653.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36953-37064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6953 -3 7064 bp Feature: domain Description: GIIM Note: maturase Location: 37115-37349 bp Feature: domain Description: GIIM Note: maturase Location: 3 7115-3 73 49 bp Feature: gene Location: 38892-39104 bp Ori: CUQ89657.1 Gene: lexA_2 Feature: domain Description: LexA_DNA_bind Location: 38901-39090 bp Feature: domain Description: LexA_DNA_bind Location: 3 8901-3 9090 bp Feature: gene Location: 39117-39356 bp Feature: gene Location: 71054-71365 bp Feature: gene Location: 71384-71662 bp Ori: CUQ89837.1 Feature: domain Description: DUF4314 Location: 71402-71594 bp Feature: domain Description: DUF43 14 Location: 71402-71594 bp Feature: gene Location: 72899-74722 bp Ori: CUQ89842.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73199-73901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 199-73 901 bp Feature: domain Description: KOG4768 Location: 74021-74135 bp Feature: domain Description: KOG4768 Location: 74021-7413 5 bp Feature: gene Location: 74883-76097 bp Ori: CUQ89847.1 Feature: domain Description: T4SS-DNA_transf Location: 74886-75924 bp Feature: domain Description: T4SS-DNA_transf Location: 74886-75924 bp Feature: gene Location: 76094-76474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XRE (COG1476), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), RVT-GII, GIIM (pfam08388), LexA_DNA_bind (pfam01726), DUF4314 (pfam14192), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), T4SS-DNA_transf (pfam02534)