myRT

myRT report for GCA_001406855.1_RIL183

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Seq: CVRS01000133.1 Roseburia inulinivorans genome assembly RIL183, contig RIL183_82, whole genome shotgun sequence (1963 bp)
Overview 1 RT 1: 523-1798 bp Neighborhood of RT #1 [523, 1869] RVT-GII GIIM Feature: gene Location: 523-1869 bp Ori: CRL43468.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 826-1519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 826-1 51 9 bp Feature: domain Description: GIIM Note: maturase Location: 1579-1798 bp Feature: domain Description: GIIM Note: maturase Location: 1 579-1 798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CVRS01000080.1 Roseburia inulinivorans genome assembly RIL183, contig RIL183_3, whole genome shotgun sequence (163303 bp)
Overview 1 RT 1: 83582-98017 bp Neighborhood of RT #1 [83582, 98017] YodL LPD16 DUF4316 LPD25 KOG1000 RVT-GII YtxK COG4646 Feature: gene Location: 83582-86338 bp Ori: CRL40090.1 Feature: domain Description: YodL Location: 84362-84656 bp Feature: domain Description: YodL Location: 84362 -84656 bp Feature: domain Description: LPD16 Location: 84686-84908 bp Feature: domain Description: LPD16 Location: 84686-84908 bp Feature: domain Description: DUF4316 Location: 84956-85040 bp Feature: domain Description: DUF4316 Location: 84956-85040 bp Feature: domain Description: LPD25 Location: 85649-85946 bp Feature: domain Description: LPD2 5 Location: 85649-85946 bp Feature: gene Location: 86420-87472 bp Ori: CRL40093.1 Feature: domain Description: KOG1000 Location: 86432-86642 bp Feature: domain Description: KOG1000 Location: 86432 -86642 bp Feature: gene Location: 87610-89523 bp Ori: CRL40096.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87928-88651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8792 8-88651 bp Feature: gene Location: 90210-96860 bp Ori: CRL40099.1 Feature: domain Description: YtxK Location: 93018-93873 bp Feature: domain Description: YtxK Location: 93018-93873 bp Feature: domain Description: COG4646 Location: 93936-96501 bp Feature: domain Description: COG4646 Location: 93936-96501 bp Feature: gene Location: 96929-98017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YodL (pfam14191), LPD16 (pfam18830), DUF4316 (pfam14195), LPD25 (pfam18840), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: CVRS01000124.1 Roseburia inulinivorans genome assembly RIL183, contig RIL183_75, whole genome shotgun sequence (3056 bp)
Overview 1 RT 1: 297-2459 bp Neighborhood of RT #1 [297, 2467] Cas2_I_II_III RVT-CRISPR cas1_HMARI Feature: gene Location: 297-557 bp Ori: CRL43258.1 Feature: domain Description: Cas2_I_II_III Location: 306-531 bp Feature: domain Description: Cas2_I_II_III Location: 3 06-53 1 bp Feature: gene Location: 566-2467 bp Ori: CRL43259.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 773-1352 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 773 -13 52 bp Feature: domain Description: cas1_HMARI Location: 1487-2459 bp Feature: domain Description: cas1_HMARI Location: 1487-2459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_HMARI (TIGR03641)