myRT

myRT report for GCA_001411535.1_ASM141153v1

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Seq: LHUP01000239.1 Acidovorax sp. SD340 contig_130, whole genome shotgun sequence (13046 bp)
Overview 1 RT 1: 9642-13046 bp Neighborhood of RT #1 [9642, 13046] RVT-Retrons COG5639 Feature: gene Location: 9642-9830 bp Feature: gene Location: 10916-12091 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11174-11822 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 74-1 1 822 bp Feature: gene Location: 12468-12755 bp Feature: domain Description: COG5639 Location: 12483-12684 bp Feature: domain Description: COG5639 Location: 1 2483-1 2684 bp Feature: gene Location: 12752-13046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG5639 (Uncharacterized protein )

Seq: LHUP01000179.1 Acidovorax sp. SD340 contig_197, whole genome shotgun sequence (5450 bp)
Overview 1 RT 1: 1551-5401 bp Neighborhood of RT #1 [1551, 5409] HTH_XRE DUF2958 RVT_N RVT-GII GIIM COG5489 Feature: gene Location: 1551-1796 bp Feature: domain Description: HTH_XRE Location: 1605-1776 bp Feature: domain Description: HTH_XRE Location: 1605-1776 bp Feature: gene Location: 1893-2240 bp Feature: domain Description: DUF2958 Location: 1905-2235 bp Feature: domain Description: DUF2 958 Location: 1905-2 2 35 bp Feature: gene Location: 2990-4489 bp Feature: RT Description: RVT_N Location: 3053-3290 bp Feature: RT Description: RVT_N Location: 3053-32 90 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3341-3983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3341-3983 bp Feature: domain Description: GIIM Note: maturase Location: 4034-4268 bp Feature: domain Description: GIIM Note: maturase Location: 4034-42 68 bp Feature: gene Location: 5101-5409 bp Feature: domain Description: COG5489 Location: 5104-5401 bp Feature: domain Description: COG5489 Location: 5104-5401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), DUF2958 (pfam11171), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG5489 (Uncharacterized conserved protein, DUF736 family )

Seq: LHUP01000094.1 Acidovorax sp. SD340 contig_111, whole genome shotgun sequence (15554 bp)
Overview 1 RT 1: 5294-9399 bp Neighborhood of RT #1 [5294, 9527] rpsQ AHP1 RVT-Retrons KOG3139 CytB Feature: gene Location: 5294-5563 bp Feature: domain Description: rpsQ Location: 5312-5552 bp Feature: domain Description: rpsQ Location: 53 12-5552 bp Feature: gene Location: 5820-6329 bp Feature: domain Description: AHP1 Location: 5823-6315 bp Feature: domain Description: AHP1 Location: 5823 -63 15 bp Feature: gene Location: 6472-8061 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7180-7837 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7180-783 7 bp Feature: gene Location: 8309-8800 bp Feature: domain Description: KOG3139 Location: 8357-8786 bp Feature: domain Description: KOG3 13 9 Location: 83 57-8786 bp Feature: gene Location: 8847-9527 bp Feature: domain Description: CytB Location: 8862-9399 bp Feature: domain Description: CytB Location: 8862-93 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsQ (PRK05610), AHP1 (COG0678), RVT-Retrons, KOG3139 (KOG3139, N-acetyltransferase ), CytB (COG3658)