myRT

myRT report for GCA_001411885.1_ASM141188v1

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Seq: KQ475287.1 Citrobacter freundii strain ST2 genomic scaffold Scaffold1, whole genome shotgun sequence (4774968 bp)
Overview 1 RT 1: 3261704-3265411 bp Neighborhood of RT #1 [3261704, 3265411] RVT-UG7 PRK09692 Feature: gene Location: 3261704-3262114 bp Feature: gene Location: 3262441-3263004 bp Feature: gene Location: 3263001-3264083 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3263409-3263838 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3263409-3263838 bp Feature: gene Location: 3264076-3265245 bp Feature: domain Description: PRK09692 Location: 3264082-3265222 bp Feature: domain Description: PRK09692 Location: 3264082-3265222 bp Feature: gene Location: 3265259-3265411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional)

Seq: KQ475288.1 Citrobacter freundii strain ST2 genomic scaffold Scaffold2, whole genome shotgun sequence (115124 bp)
Overview 1 RT 1: 9220-11989 bp 2 RT 2: 75790-80158 bp 3 RT 3: 108142-111302 bp Neighborhood of RT #1 [9220, 11991] RVT-GII DDE_Tnp_IS1 Neighborhood of RT #2 [75790, 80274] InsE PHA02517 RVT-GII GIIM PHA02517 COG3547 Neighborhood of RT #3 [108142, 111304] PRK10276 RVT-GII DDE_Tnp_IS1 Feature: gene Location: 9220-9501 bp Feature: gene Location: 9555-10157 bp Feature: gene Location: 10132-11142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10138-10750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10138-10750 bp Feature: gene Location: 11265-11477 bp Feature: gene Location: 11488-11991 bp Feature: domain Description: DDE_Tnp_IS1 Location: 11599-11989 bp Feature: domain Description: DDE_Tnp_IS1 Location: 11599-11989 bp Feature: gene Location: 75790-76074 bp Feature: domain Description: InsE Location: 75802-76063 bp Feature: domain Description: InsE Location: 75802 -76063 bp Feature: gene Location: 76116-76541 bp Feature: domain Description: PHA02517 Location: 76140-76476 bp Feature: domain Description: PHA02 517 Location: 76140-76476 bp Feature: gene Location: 77133-78656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77406-78138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77406-78138 bp Feature: domain Description: GIIM Note: maturase Location: 78213-78411 bp Feature: domain Description: GIIM Note: maturase Location: 782 13-78411 bp Feature: gene Location: 78779-78979 bp Feature: domain Description: PHA02517 Location: 78782-78944 bp Feature: domain Description: PHA02 517 Location: 78782 -78944 bp Feature: gene Location: 79198-80274 bp Feature: domain Description: COG3547 Location: 79237-80158 bp Feature: domain Description: COG3547 Location: 792 37-80158 bp Feature: gene Location: 108142-108567 bp Feature: domain Description: PRK10276 Location: 108145-108553 bp Feature: domain Description: PRK102 76 Location: 108145-108553 bp Feature: gene Location: 108868-109470 bp Feature: gene Location: 109445-110455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109451-110063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109451-110063 bp Feature: gene Location: 110578-110790 bp Feature: gene Location: 110801-111304 bp Feature: domain Description: DDE_Tnp_IS1 Location: 110912-111302 bp Feature: domain Description: DDE_Tnp_IS1 Location: 110912 -111302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS1 (pfam03400), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), COG3547 (Transposase ), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)