myRT

myRT report for GCA_001412315.1_ASM141231v1

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Seq: CP013020.1 Bacteroides vulgatus strain mpk genome (5165891 bp)
Overview 1 RT 1: 386121-390584 bp 2 RT 2: 396139-399406 bp 3 RT 3: 411315-420120 bp 4 RT 4: 4740709-4751191 bp Neighborhood of RT #1 [386121, 390589] COG4584 PRK06526 RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Neighborhood of RT #2 [396139, 399429] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3876 Neighborhood of RT #3 [411315, 420120] ArdC RVT-UG24 dnaG Neighborhood of RT #4 [4740709, 4751191] ThyA ThyA RVT-DGRs Laminin_G_3 Laminin_G_3 CotH Feature: gene Location: 386121-387347 bp Ori: ALK82941.1 Feature: domain Description: COG4584 Location: 386142-386628 bp Feature: domain Description: COG4584 Location: 3861 42-386628 bp Feature: gene Location: 387359-388114 bp Ori: ALK82942.1 Feature: domain Description: PRK06526 Location: 387404-388094 bp Feature: domain Description: PRK06526 Location: 387404-388094 bp Feature: gene Location: 388328-389314 bp Ori: ALK82943.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388385-388589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388385-388589 bp Feature: domain Description: Intron_maturas2 Location: 388661-388970 bp Feature: domain Description: Intron_maturas2 Location: 388661 -388970 bp Feature: gene Location: 389340-390011 bp Ori: ALK82944.1 Feature: domain Description: Bac_Flav_CT_N Location: 389427-389988 bp Feature: domain Description: Bac_Flav_CT_N Location: 389427-389988 bp Feature: gene Location: 390014-390589 bp Ori: ALK82945.1 Feature: domain Description: TraO Location: 390089-390584 bp Feature: domain Description: TraO Location: 390089-390584 bp Feature: gene Location: 396139-396354 bp Feature: gene Location: 396675-396914 bp Feature: gene Location: 397385-398416 bp Ori: ALK82959.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397496-397691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397496-397691 bp Feature: domain Description: Intron_maturas2 Location: 397766-398093 bp Feature: domain Description: Intron_maturas2 Location: 397766-398093 bp Feature: domain Description: HNHc Note: nucleases Location: 398222-398387 bp Feature: domain Description: HNHc Note: nucleases Location: 398222-398387 bp Feature: gene Location: 398596-398946 bp Ori: ALK82960.1 Feature: domain Description: Bac_Flav_CT_G Location: 398599-398932 bp Feature: domain Description: Bac_Flav_CT_G Location: 398599-398932 bp Feature: gene Location: 399070-399429 bp Ori: ALK82961.1 Feature: domain Description: DUF3876 Location: 399136-399406 bp Feature: domain Description: DUF3876 Location: 3991 36-399406 bp Feature: gene Location: 411315-411998 bp Feature: gene Location: 412031-413008 bp Ori: ALK82976.1 Feature: domain Description: ArdC Location: 412046-412955 bp Feature: domain Description: ArdC Location: 41 2046-41 2955 bp Feature: gene Location: 413911-417285 bp Ori: ALK82977.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 414490-414943 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 41 4490-41 4943 bp Feature: gene Location: 417965-419017 bp Ori: ALK82978.1 Feature: domain Description: dnaG Location: 418061-419009 bp Feature: domain Description: dnaG Location: 41 8061 -41 9009 bp Feature: gene Location: 419866-420120 bp Feature: gene Location: 4740709-4741353 bp Ori: ALK86562.1 Feature: domain Description: ThyA Location: 4740718-4740955 bp Feature: domain Description: ThyA Location: 474071 8-4740955 bp Feature: domain Description: ThyA Location: 4741012-4741312 bp Feature: domain Description: ThyA Location: 4741 01 2-4741 31 2 bp Feature: gene Location: 4741426-4741668 bp Feature: gene Location: 4742333-4743655 bp Ori: ALK86564.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4742564-4743158 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4742564-47431 58 bp Feature: gene Location: 4744154-4750900 bp Ori: ALK86565.1 Feature: domain Description: Laminin_G_3 Location: 4745615-4745708 bp Feature: domain Description: Laminin_G_3 Location: 474561 5-4745708 bp Feature: domain Description: Laminin_G_3 Location: 4746356-4746776 bp Feature: domain Description: Laminin_G_3 Location: 4746356-4746776 bp Feature: domain Description: CotH Location: 4747745-4748087 bp Feature: domain Description: CotH Location: 4747745-4748087 bp Feature: gene Location: 4750904-4751191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), PRK06526 (transposase; Provisional), RVT-GII, Intron_maturas2 (pfam01348), Bac_Flav_CT_N (TIGR03780), TraO (pfam10626), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992), ArdC (COG4227)
RVT-UG24, dnaG (TIGR01391), ThyA (COG0207), RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757)