myRT

myRT report for GCA_001417795.1_ASM141779v1

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Seq: BCBX01000074.1 Microbispora sp. GMKU363 DNA, contig: scaffold00045, whole genome shotgun sequence (12191 bp)
Overview 1 RT 1: 2-8753 bp Neighborhood of RT #1 [2, 9256] RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat Rhs_assc_core GIY-YIG RVT-GII GIIM DDE_5 Feature: gene Location: 2-4213 bp Feature: domain Description: RHS_repeat Location: 1010-1133 bp Feature: domain Description: RHS_repeat Location: 1 01 0-1 1 33 bp Feature: domain Description: RHS_repeat Location: 1739-1832 bp Feature: domain Description: RHS_repeat Location: 1 739-1 832 bp Feature: domain Description: RHS_repeat Location: 1937-2024 bp Feature: domain Description: RHS_repeat Location: 1 937-2024 bp Feature: domain Description: RHS_repeat Location: 2561-2669 bp Feature: domain Description: RHS_repeat Location: 2561 -2669 bp Feature: domain Description: RHS_repeat Location: 2759-2837 bp Feature: domain Description: RHS_repeat Location: 2759-2837 bp Feature: domain Description: RHS_repeat Location: 2858-2936 bp Feature: domain Description: RHS_repeat Location: 2858-2936 bp Feature: domain Description: RHS_repeat Location: 2960-3065 bp Feature: domain Description: RHS_repeat Location: 2960-3065 bp Feature: domain Description: Rhs_assc_core Location: 3266-3503 bp Feature: domain Description: Rhs_assc_core Location: 3266-3503 bp Feature: domain Description: GIY-YIG Location: 3917-4001 bp Feature: domain Description: GIY-YIG Location: 391 7-4001 bp Feature: gene Location: 5044-5577 bp Feature: gene Location: 5579-7225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5930-6560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5930-6560 bp Feature: domain Description: GIIM Note: maturase Location: 6647-6854 bp Feature: domain Description: GIIM Note: maturase Location: 6647-6854 bp Feature: gene Location: 7349-7498 bp Feature: gene Location: 7940-9256 bp Feature: domain Description: DDE_5 Location: 7997-8753 bp Feature: domain Description: DDE_5 Location: 7997-8753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RHS_repeat (pfam05593), Rhs_assc_core (TIGR03696), GIY-YIG (pfam01541), RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546)

Seq: BCBX01000078.1 Microbispora sp. GMKU363 DNA, contig: scaffold00049, whole genome shotgun sequence (3359 bp)
Overview 1 RT 1: 2-3300 bp Neighborhood of RT #1 [2, 3314] DDE_Tnp_ISL3 RVT-GII GIIM HTH_29 COG3464 Feature: gene Location: 2-325 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 11-281 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 11-2 81 bp Feature: gene Location: 842-2311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1178-1862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1178-1862 bp Feature: domain Description: GIIM Note: maturase Location: 1934-2153 bp Feature: domain Description: GIIM Note: maturase Location: 1934-2 153 bp Feature: gene Location: 2316-3314 bp Feature: domain Description: HTH_29 Location: 2592-2733 bp Feature: domain Description: HTH_2 9 Location: 2 592 -2 733 bp Feature: domain Description: COG3464 Location: 2928-3300 bp Feature: domain Description: COG3464 Location: 2 92 8-3300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), COG3464 (Transposase ), DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388)