myRT

myRT report for GCA_001418015.1_ASM141801v1

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Seq: LIQG01000017.1 Lacinutrix mariniflava strain AKS432 ctg7180000000632, whole genome shotgun sequence (282231 bp)
Overview 1 RT 1: 73468-79704 bp Neighborhood of RT #1 [73468, 79709] ALDH_SSADH1_GabD1 VirE_N RVT-UG28b COG4487 CspC Feature: gene Location: 73468-74865 bp Feature: domain Description: ALDH_SSADH1_GabD1 Location: 73567-74848 bp Feature: domain Description: ALDH_SSADH1 _GabD1 Location: 73567-74848 bp Feature: gene Location: 74931-75896 bp Feature: domain Description: VirE_N Location: 75090-75444 bp Feature: domain Description: VirE_N Location: 75090-75444 bp Feature: gene Location: 76129-77961 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 76636-77338 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 76636-77338 bp Feature: gene Location: 78007-79272 bp Feature: domain Description: COG4487 Location: 78016-79243 bp Feature: domain Description: COG4487 Location: 7801 6-79243 bp Feature: gene Location: 79455-79709 bp Feature: domain Description: CspC Location: 79521-79704 bp Feature: domain Description: CspC Location: 79521 -79704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALDH_SSADH1_GabD1 (cd07100), VirE_N (pfam08800), RVT-UG28b, COG4487 (Uncharacterized protein, contains DUF2130 domain ), CspC (COG1278)

Seq: LIQG01000027.1 Lacinutrix mariniflava strain AKS432 ctg7180000000642, whole genome shotgun sequence (339751 bp)
Overview 1 RT 1: 170151-180521 bp Neighborhood of RT #1 [170151, 180532] WGR_DNA_ligase RVT-Retrons DEXSc_Pif1_like KOG0987 Hrd HTH_40 SCAD_SBCAD Feature: gene Location: 170151-173216 bp Feature: domain Description: WGR_DNA_ligase Location: 170169-170385 bp Feature: domain Description: WGR_DNA_ligase Location: 170169-170385 bp Feature: gene Location: 173221-174849 bp Feature: gene Location: 175108-176610 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 175657-176272 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 175657-1762 72 bp Feature: gene Location: 176899-179346 bp Feature: domain Description: DEXSc_Pif1_like Location: 176950-177472 bp Feature: domain Description: DEXSc_Pif1_like Location: 176950-177472 bp Feature: domain Description: KOG0987 Location: 177967-178039 bp Feature: domain Description: KOG0987 Location: 177967-178039 bp Feature: domain Description: Hrd Location: 178762-178975 bp Feature: domain Description: Hrd Location: 178762 -178975 bp Feature: domain Description: HTH_40 Location: 179056-179317 bp Feature: domain Description: HTH_40 Location: 179056-179317 bp Feature: gene Location: 179390-180532 bp Feature: domain Description: SCAD_SBCAD Location: 179411-180521 bp Feature: domain Description: SCAD_SBCAD Location: 179411-18052 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), RVT-Retrons, DEXSc_Pif1_like (cd18037), KOG0987 (KOG0987, DNA helicase PIF1/RRM3 ), Hrd (LOAD_Hrd), HTH_40 (pfam14493), SCAD_SBCAD (cd01158)