myRT

myRT report for GCA_001418085.1_ASM141808v1

Download annotations/find similar RTs

Seq: LIQH01000025.1 Lacinutrix algicola strain AKS293 ctg7180000000511, whole genome shotgun sequence (21276 bp)
Overview 1 RT 1: 8756-16997 bp Neighborhood of RT #1 [8756, 16997] SCAD_SBCAD DEXSc_Pif1_like RecD HRDC HTH_40 RVT-Retrons Feature: gene Location: 8756-9898 bp Feature: domain Description: SCAD_SBCAD Location: 8777-9887 bp Feature: domain Description: SCAD_SBCAD Location: 8777-9887 bp Feature: gene Location: 9942-12389 bp Feature: domain Description: DEXSc_Pif1_like Location: 9993-10515 bp Feature: domain Description: DEXSc_Pif1 _like Location: 9993-1 051 5 bp Feature: domain Description: RecD Location: 10773-11229 bp Feature: domain Description: RecD Location: 1 0773-1 1 229 bp Feature: domain Description: HRDC Location: 11814-12033 bp Feature: domain Description: HRDC Location: 1 1 81 4-1 2033 bp Feature: domain Description: HTH_40 Location: 12099-12360 bp Feature: domain Description: HTH_40 Location: 1 2099-1 2360 bp Feature: gene Location: 12676-14178 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13225-13840 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3225-1 3840 bp Feature: gene Location: 14437-15135 bp Feature: gene Location: 15369-16997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SCAD_SBCAD (cd01158), DEXSc_Pif1_like (cd18037), RecD (COG0507), HRDC (smart00341), HTH_40 (pfam14493), RVT-Retrons

Seq: LIQH01000044.1 Lacinutrix algicola strain AKS293 ctg7180000000530, whole genome shotgun sequence (79431 bp)
Overview 1 RT 1: 62408-67412 bp Neighborhood of RT #1 [62408, 68041] PHA02517 InsE RVT-UG12 TIR_2 Feature: gene Location: 62408-62812 bp Feature: domain Description: PHA02517 Location: 62435-62801 bp Feature: domain Description: PHA02 517 Location: 62 435-62 801 bp Feature: gene Location: 62848-63219 bp Feature: domain Description: InsE Location: 62872-63109 bp Feature: domain Description: InsE Location: 62 872 -63109 bp Feature: gene Location: 63408-65426 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 63858-64341 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 63858-64341 bp Feature: gene Location: 65571-66443 bp Feature: gene Location: 67013-68041 bp Feature: domain Description: TIR_2 Location: 67037-67412 bp Feature: domain Description: TIR_2 Location: 67037-67412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-UG12, TIR_2 (pfam13676)