myRT

myRT report for GCA_001418175.1_ASM141817v1

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Seq: LIPS01000012.1 Streptomyces hirsutus strain NRRL B-3040 B3040_contig_12, whole genome shotgun sequence (6292 bp)
Overview 1 RT 1: 115-5314 bp Neighborhood of RT #1 [115, 5314] Peptidase_S51 DDE_Tnp_1_6 RVT-GII GIIM DUF772 Feature: gene Location: 115-783 bp Feature: domain Description: Peptidase_S51 Location: 127-754 bp Feature: domain Description: Peptidase_S51 Location: 1 27-754 bp Feature: gene Location: 968-2410 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1874-2240 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 874-2240 bp Feature: gene Location: 2605-4038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2929-3613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2929-361 3 bp Feature: domain Description: GIIM Note: maturase Location: 3688-3916 bp Feature: domain Description: GIIM Note: maturase Location: 3688-391 6 bp Feature: gene Location: 4548-4925 bp Feature: domain Description: DUF772 Location: 4713-4833 bp Feature: domain Description: DUF772 Location: 471 3-4833 bp Feature: gene Location: 5087-5314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S51 (pfam03575), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751)

Seq: LIPS01000238.1 Streptomyces hirsutus strain NRRL B-3040 B3040_contig_238, whole genome shotgun sequence (4916 bp)
Overview 1 RT 1: 2151-4323 bp Neighborhood of RT #1 [2151, 4424] DDE_Tnp_1_6 RVT-GII GIIM Feature: gene Location: 2151-2312 bp Feature: gene Location: 2407-3015 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2542-2902 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2 542 -2 902 bp Feature: gene Location: 3117-4424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3378-4038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3378-4038 bp Feature: domain Description: GIIM Note: maturase Location: 4119-4323 bp Feature: domain Description: GIIM Note: maturase Location: 4119-432 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388)

Seq: LIPS01000276.1 Streptomyces hirsutus strain NRRL B-3040 B3040_contig_276, whole genome shotgun sequence (12556 bp)
Overview 1 RT 1: 1613-6511 bp Neighborhood of RT #1 [1613, 6522] Gp49 RVT-GII GIIM INT_ICEBs1_C_like GlnA Feature: gene Location: 1613-2011 bp Feature: domain Description: Gp49 Location: 1682-1931 bp Feature: domain Description: Gp49 Location: 1682-193 1 bp Feature: gene Location: 2222-3004 bp Feature: gene Location: 3251-4816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3572-4256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 572-4256 bp Feature: domain Description: GIIM Note: maturase Location: 4328-4556 bp Feature: domain Description: GIIM Note: maturase Location: 43 28-4556 bp Feature: gene Location: 4863-5084 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4866-4983 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4866-4983 bp Feature: gene Location: 5161-6522 bp Feature: domain Description: GlnA Location: 5173-6511 bp Feature: domain Description: GlnA Location: 5173 -6511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), RVT-GII, GIIM (pfam08388), INT_ICEBs1_C_like (cd01189), GlnA (TIGR00653)

Seq: LIPS01000047.1 Streptomyces hirsutus strain NRRL B-3040 B3040_contig_47, whole genome shotgun sequence (18469 bp)
Overview 1 RT 1: 11125-17616 bp Neighborhood of RT #1 [11125, 17657] hydroxyacyl_CoA_DH DUF772 RVT-GII GIIM IclR MFS_ShiA_like Feature: gene Location: 11125-12360 bp Feature: domain Description: hydroxyacyl_CoA_DH Location: 11407-12346 bp Feature: domain Description: hydroxyacyl_CoA_DH Location: 114 07-1234 6 bp Feature: gene Location: 12521-13009 bp Feature: domain Description: DUF772 Location: 12680-12896 bp Feature: domain Description: DUF772 Location: 12680-12896 bp Feature: gene Location: 13201-14673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13543-14239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1354 3-14 239 bp Feature: domain Description: GIIM Note: maturase Location: 14311-14530 bp Feature: domain Description: GIIM Note: maturase Location: 14 311-14 530 bp Feature: gene Location: 15294-16073 bp Feature: domain Description: IclR Location: 15309-16017 bp Feature: domain Description: IclR Location: 15309-16017 bp Feature: gene Location: 16305-17657 bp Feature: domain Description: MFS_ShiA_like Location: 16410-17616 bp Feature: domain Description: MFS_ShiA_like Location: 164 10-17616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hydroxyacyl_CoA_DH (cd08254), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), IclR (pfam01614), MFS_ShiA_like (cd17369)