myRT

myRT report for GCA_001418765.1_ASM141876v1

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Seq: LIYC01000059.1 Gordonia sp. HS-NH1 HS-NH1_scaffold59, whole genome shotgun sequence (18885 bp)
Overview 1 RT 1: 2-10675 bp Neighborhood of RT #1 [2, 10698] PLDc_N_DEXD_b1 SSL2 DUF3427 RVT-UG5 nitrilase COG0610 RMtype1_S_AmiI-TRD2-CR2_like RMtype1_S_AmiI-TRD2-CR2_like Feature: gene Location: 2-2923 bp Feature: domain Description: PLDc_N_DEXD_b1 Location: 215-641 bp Feature: domain Description: PLDc_N_DEXD_b1 Location: 21 5-641 bp Feature: domain Description: SSL2 Location: 755-1814 bp Feature: domain Description: SSL2 Location: 755-1 81 4 bp Feature: domain Description: DUF3427 Location: 2459-2900 bp Feature: domain Description: DUF3427 Location: 2459-2900 bp Feature: gene Location: 3012-6098 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3477-3954 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3477-3954 bp Feature: domain Description: nitrilase Location: 5412-6003 bp Feature: domain Description: nitrilase Location: 541 2-6003 bp Feature: gene Location: 6281-9430 bp Feature: domain Description: COG0610 Location: 6296-8801 bp Feature: domain Description: COG061 0 Location: 6296-8801 bp Feature: gene Location: 9430-10698 bp Feature: domain Description: RMtype1_S_AmiI-TRD2-CR2_like Location: 9508-10012 bp Feature: domain Description: RMtype1 _S_AmiI-TRD2-CR2_like Location: 9508-1 001 2 bp Feature: domain Description: RMtype1_S_AmiI-TRD2-CR2_like Location: 10078-10675 bp Feature: domain Description: RMtype1 _S_AmiI-TRD2-CR2_like Location: 1 0078-1 0675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_N_DEXD_b1 (cd09203), SSL2 (COG1061), DUF3427 (pfam11907), RVT-UG5, nitrilase (cl11424), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RMtype1_S_AmiI-TRD2-CR2_like (cd17248)

Seq: LIYC01000079.1 Gordonia sp. HS-NH1 HS-NH1_scaffold79, whole genome shotgun sequence (5729 bp)
Overview 1 RT 1: 164-5501 bp Neighborhood of RT #1 [164, 5512] RVT-Retrons HGbI_like pimE CypX Feature: gene Location: 164-328 bp Feature: gene Location: 796-2067 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1231-1834 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 31-1834 bp Feature: gene Location: 2189-2635 bp Feature: domain Description: HGbI_like Location: 2198-2570 bp Feature: domain Description: HGbI_like Location: 2 198-2 570 bp Feature: gene Location: 2723-5512 bp Feature: domain Description: pimE Location: 2774-3953 bp Feature: domain Description: pimE Location: 2 774-3953 bp Feature: domain Description: CypX Location: 4259-5501 bp Feature: domain Description: CypX Location: 42 59-5501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HGbI_like, pimE (PRK13375), CypX (COG2124)