myRT

myRT report for GCA_001420055.1_ASM142005v1

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Seq: LIVG01000018.1 Escherichia coli strain 228 contig000018, whole genome shotgun sequence (83783 bp)
Overview 1 RT 1: 9761-17378 bp Neighborhood of RT #1 [9761, 17413] Nuc_deoxyrib_tr RVT-Retrons AAA_15 DUF4917 Feature: gene Location: 9761-10012 bp Feature: gene Location: 10384-10878 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 10528-10702 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 0528-1 0702 bp Feature: gene Location: 11534-12634 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11717-12245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 71 7-1 2245 bp Feature: gene Location: 12749-14995 bp Feature: domain Description: AAA_15 Location: 12752-13760 bp Feature: domain Description: AAA_1 5 Location: 1 2752-1 3760 bp Feature: gene Location: 16394-17413 bp Feature: domain Description: DUF4917 Location: 16454-17378 bp Feature: domain Description: DUF491 7 Location: 1 6454-1 7378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263)

Seq: LIVG01000055.1 Escherichia coli strain 228 contig000055, whole genome shotgun sequence (26950 bp)
Overview 1 RT 1: 11877-17159 bp Neighborhood of RT #1 [11877, 17422] RVT-GII Inovirus_Gp2 DUF3987 Feature: gene Location: 11877-12110 bp Feature: gene Location: 12748-12984 bp Feature: gene Location: 12971-14134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13085-13772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13085-13772 bp Feature: gene Location: 14460-15023 bp Feature: domain Description: Inovirus_Gp2 Location: 14517-14958 bp Feature: domain Description: Inovirus_Gp2 Location: 14517-14958 bp Feature: gene Location: 15989-17422 bp Feature: domain Description: DUF3987 Location: 16082-17159 bp Feature: domain Description: DUF3987 Location: 16082 -17159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Inovirus_Gp2 (pfam11726), DUF3987 (pfam13148)

Seq: LIVG01000068.1 Escherichia coli strain 228 contig000068, whole genome shotgun sequence (15303 bp)
Overview 1 RT 1: 12359-15278 bp Neighborhood of RT #1 [12359, 15303] RVT-GII Intron_maturas2 Feature: gene Location: 12359-12577 bp Feature: gene Location: 12987-13193 bp Feature: gene Location: 13871-15303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14138-14969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1413 8-14969 bp Feature: domain Description: Intron_maturas2 Location: 15083-15278 bp Feature: domain Description: Intron_maturas2 Location: 15083 -15278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)