myRT

myRT report for GCA_001420595.1_ASM142059v1

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Seq: LJIX01000006.1 Bacillus solani strain FJAT-18043 super27, whole genome shotgun sequence (4991450 bp)
Overview 1 RT 1: 911803-917268 bp 2 RT 2: 1064409-1068215 bp 3 RT 3: 1160630-1167527 bp 4 RT 4: 1171989-1176611 bp 5 RT 5: 2082813-2092183 bp 6 RT 6: 4046072-4054825 bp 7 RT 7: 4372938-4376462 bp Neighborhood of RT #1 [911803, 917270] TetR_N TetR_C_11 MFS_NepI_like RVT-GII GIIM DUF3231 DUF3231 Neighborhood of RT #2 [1064409, 1068223] CxxCxxCC pdsO RVT-GII group_II_RT_mat xerC Neighborhood of RT #3 [1160630, 1167991] Dcm Aminoglyc_resit RVT-GII GIIM AcrR TetR_C_17 MupV_like_SDR_e PRK14875 Neighborhood of RT #4 [1171989, 1176625] RVT-GII GIIM AcrR AraJ Neighborhood of RT #5 [2082813, 2092221] YopX RVT-GII Intron_maturas2 HNHc RimL DUF3231 DUF3231 RVT-GII group_II_RT_mat phage_arpU Neighborhood of RT #6 [4046072, 4054833] APH_ChoK_like RVT-GII GIIM GDPD MhpC DUF3231 DUF3231 RVT-GII Neighborhood of RT #7 [4372938, 4376462] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 911803-912381 bp Ori: KQL18242.1 Feature: domain Description: TetR_N Location: 911854-911980 bp Feature: domain Description: TetR_N Location: 91 1 854-91 1 980 bp Feature: domain Description: TetR_C_11 Location: 912028-912349 bp Feature: domain Description: TetR_C_1 1 Location: 91 2028-91 2349 bp Feature: gene Location: 912637-913830 bp Ori: KQL18243.1 Feature: domain Description: MFS_NepI_like Location: 912694-913810 bp Feature: domain Description: MFS_NepI_like Location: 91 2694-91 381 0 bp Feature: gene Location: 914513-915850 bp Ori: KQL18244.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914768-915461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 4768-91 5461 bp Feature: domain Description: GIIM Note: maturase Location: 915542-915749 bp Feature: domain Description: GIIM Note: maturase Location: 91 5542-91 5749 bp Feature: gene Location: 915989-916237 bp Feature: gene Location: 916248-917270 bp Ori: KQL18246.1 Feature: domain Description: DUF3231 Location: 916281-916764 bp Feature: domain Description: DUF3231 Location: 91 6281 -91 6764 bp Feature: domain Description: DUF3231 Location: 916788-917268 bp Feature: domain Description: DUF3231 Location: 91 6788-91 7268 bp Feature: gene Location: 1064409-1064756 bp Ori: KQL18360.1 Feature: domain Description: CxxCxxCC Location: 1064424-1064643 bp Feature: domain Description: CxxCxxCC Location: 1 064424-1 064643 bp Feature: gene Location: 1065095-1065388 bp Ori: KQL18361.1 Feature: domain Description: pdsO Location: 1065152-1065362 bp Feature: domain Description: pdsO Location: 1 0651 52-1 065362 bp Feature: gene Location: 1066119-1066751 bp Ori: KQL18362.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066374-1066746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 066374-1 066746 bp Feature: gene Location: 1066738-1067112 bp Ori: KQL18363.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1066747-1066990 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 066747-1 066990 bp Feature: gene Location: 1067381-1068223 bp Ori: KQL18364.1 Feature: domain Description: xerC Location: 1067423-1068215 bp Feature: domain Description: xerC Location: 1 067423-1 06821 5 bp Feature: gene Location: 1160630-1162201 bp Ori: KQL18440.1 Feature: domain Description: Dcm Location: 1161197-1162154 bp Feature: domain Description: Dcm Location: 1 1 61 1 97-1 1 621 54 bp Feature: gene Location: 1162637-1163239 bp Ori: KQL18441.1 Feature: domain Description: Aminoglyc_resit Location: 1162718-1162796 bp Feature: domain Description: Aminoglyc_resit Location: 1 1 6271 8-1 1 62796 bp Feature: gene Location: 1163826-1165154 bp Ori: KQL18442.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1164081-1164774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 64081 -1 1 64774 bp Feature: domain Description: GIIM Note: maturase Location: 1164861-1165068 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 64861 -1 1 65068 bp Feature: gene Location: 1165511-1166077 bp Ori: KQL18443.1 Feature: domain Description: AcrR Location: 1165523-1165787 bp Feature: domain Description: AcrR Location: 1 1 65523-1 1 65787 bp Feature: domain Description: TetR_C_17 Location: 1165880-1166021 bp Feature: domain Description: TetR_C_1 7 Location: 1 1 65880-1 1 66021 bp Feature: gene Location: 1166135-1167991 bp Ori: KQL18444.1 Feature: domain Description: MupV_like_SDR_e Location: 1166147-1167023 bp Feature: domain Description: MupV_like_SDR_e Location: 1 1 661 47-1 1 67023 bp Feature: domain Description: PRK14875 Location: 1167251-1167527 bp Feature: domain Description: PRK1 4875 Location: 1 1 67251 -1 1 67527 bp Feature: gene Location: 1171989-1172462 bp Feature: gene Location: 1172795-1173118 bp Feature: gene Location: 1173075-1174403 bp Ori: KQL18448.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1173330-1174023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 73330-1 1 74023 bp Feature: domain Description: GIIM Note: maturase Location: 1174113-1174317 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 741 1 3-1 1 7431 7 bp Feature: gene Location: 1174820-1175416 bp Ori: KQL18449.1 Feature: domain Description: AcrR Location: 1174865-1175342 bp Feature: domain Description: AcrR Location: 1 1 74865-1 1 75342 bp Feature: gene Location: 1175480-1176625 bp Ori: KQL18450.1 Feature: domain Description: AraJ Location: 1175492-1176611 bp Feature: domain Description: AraJ Location: 1 1 75492-1 1 7661 1 bp Feature: gene Location: 2082813-2083232 bp Ori: KQL19271.1 Feature: domain Description: YopX Location: 2082948-2083224 bp Feature: domain Description: YopX Location: 2082948-2083224 bp Feature: gene Location: 2084210-2084452 bp Feature: gene Location: 2086297-2088120 bp Ori: KQL19273.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2086561-2087392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2086561 -2087392 bp Feature: domain Description: Intron_maturas2 Location: 2087473-2087788 bp Feature: domain Description: Intron_maturas2 Location: 2087473-2087788 bp Feature: domain Description: HNHc Note: nucleases Location: 2087917-2088091 bp Feature: domain Description: HNHc Note: nucleases Location: 208791 7-2088091 bp Feature: gene Location: 2088339-2088878 bp Ori: KQL19274.1 Feature: domain Description: RimL Location: 2088342-2088867 bp Feature: domain Description: RimL Location: 2088342-2088867 bp Feature: gene Location: 2089064-2089654 bp Ori: KQL19275.1 Feature: domain Description: DUF3231 Location: 2089070-2089232 bp Feature: domain Description: DUF3231 Location: 2089070-2089232 bp Feature: domain Description: DUF3231 Location: 2089238-2089637 bp Feature: domain Description: DUF3231 Location: 2089238-2089637 bp Feature: gene Location: 2089990-2090307 bp Ori: KQL19276.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2090224-2090299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2090224-2090299 bp Feature: gene Location: 2090273-2090650 bp Ori: KQL19277.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 2090321-2090528 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2090321 -2090528 bp Feature: gene Location: 2091805-2092221 bp Ori: KQL19278.1 Feature: domain Description: phage_arpU Location: 2091832-2092183 bp Feature: domain Description: phage_arpU Location: 2091 832-20921 83 bp Feature: gene Location: 4046072-4046992 bp Ori: KQL21006.1 Feature: domain Description: APH_ChoK_like Location: 4046156-4046795 bp Feature: domain Description: APH_ChoK_like Location: 40461 56-4046795 bp Feature: gene Location: 4047333-4047563 bp Feature: gene Location: 4047795-4049123 bp Ori: KQL21008.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4048050-4048743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4048050-4048743 bp Feature: domain Description: GIIM Note: maturase Location: 4048830-4049037 bp Feature: domain Description: GIIM Note: maturase Location: 4048830-4049037 bp Feature: gene Location: 4049806-4050636 bp Ori: KQL21009.1 Feature: domain Description: GDPD Location: 4049923-4050610 bp Feature: domain Description: GDPD Location: 4049923-405061 0 bp Feature: gene Location: 4051680-4052555 bp Ori: KQL22030.1 Feature: domain Description: MhpC Location: 4051731-4052544 bp Feature: domain Description: MhpC Location: 4051 731 -4052544 bp Feature: gene Location: 4053352-4054359 bp Ori: KQL21010.1 Feature: domain Description: DUF3231 Location: 4053364-4053835 bp Feature: domain Description: DUF3231 Location: 4053364-4053835 bp Feature: domain Description: DUF3231 Location: 4053862-4054348 bp Feature: domain Description: DUF3231 Location: 4053862-4054348 bp Feature: gene Location: 4054585-4054833 bp Ori: KQL21011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4054588-4054825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4054588-4054825 bp Feature: gene Location: 4372938-4374761 bp Ori: KQL21263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4373202-4374033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4373202-4374033 bp Feature: domain Description: Intron_maturas2 Location: 4374114-4374429 bp Feature: domain Description: Intron_maturas2 Location: 43741 1 4-4374429 bp Feature: domain Description: HNHc Note: nucleases Location: 4374558-4374732 bp Feature: domain Description: HNHc Note: nucleases Location: 4374558-4374732 bp Feature: gene Location: 4375581-4375844 bp Feature: gene Location: 4376274-4376462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetR_N (pfam00440), TetR_C_11 (pfam16859), MFS_NepI_like (cd17324), RVT-GII, GIIM (pfam08388), DUF3231 (pfam11553), CxxCxxCC (pfam03692), pdsO (TIGR03789), group_II_RT_mat (TIGR04416), xerC (PRK01287)
Dcm (COG0270), Aminoglyc_resit (pfam10706), AcrR (COG1309), TetR_C_17 (pfam17922), MupV_like_SDR_e (cd05263), PRK14875 (acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional), AraJ (COG2814), YopX (pfam09643), Intron_maturas2 (pfam01348), HNHc (smart00507)
RimL (COG1670), phage_arpU (TIGR01637), APH_ChoK_like (cd05120), GDPD (pfam03009), MhpC (COG0596)