myRT

myRT report for GCA_001421075.1_ASM142107v1

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Seq: LJJX01000028.1 Frankia sp. CpI1-P FF86_1028, whole genome shotgun sequence (98075 bp)
Overview 1 RT 1: 1-4880 bp Neighborhood of RT #1 [1, 4942] Tra5 RVT-GII Nterm_IS4 PIN_MtVapC27-VapC40_like PIN_VapC-like Feature: gene Location: 1-1032 bp Ori: KQM04229.1 Feature: domain Description: Tra5 Location: 178-859 bp Feature: domain Description: Tra5 Location: 1 78-859 bp Feature: gene Location: 1029-2051 bp Ori: KQM04230.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1245-1911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 245-1 91 1 bp Feature: gene Location: 2773-4041 bp Ori: KQM04231.1 Feature: domain Description: Nterm_IS4 Location: 2806-3094 bp Feature: domain Description: Nterm_IS4 Location: 2806-3094 bp Feature: gene Location: 4223-4942 bp Ori: KQM04232.1 Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 4448-4601 bp Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 4448-4601 bp Feature: domain Description: PIN_VapC-like Location: 4739-4880 bp Feature: domain Description: PIN_VapC-like Location: 4739-4880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, Nterm_IS4 (pfam13006), PIN_MtVapC27-VapC40_like (cd18681), PIN_VapC-like (cd18715)

Seq: LJJX01000090.1 Frankia sp. CpI1-P FF86_1090, whole genome shotgun sequence (14320 bp)
Overview 1 RT 1: 5528-12381 bp Neighborhood of RT #1 [5528, 12386] Cas_Cas6 RVT-GII GIIM Tra5 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 5528-7003 bp Feature: gene Location: 7000-7734 bp Ori: KQM01949.1 Feature: domain Description: Cas_Cas6 Location: 7309-7717 bp Feature: domain Description: Cas_Cas6 Location: 7309-7717 bp Feature: gene Location: 8622-9152 bp Ori: KQM01950.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8625-8766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862 5-8766 bp Feature: domain Description: GIIM Note: maturase Location: 8841-9072 bp Feature: domain Description: GIIM Note: maturase Location: 8841-9072 bp Feature: gene Location: 9248-9454 bp Ori: KQM01951.1 Feature: domain Description: Tra5 Location: 9251-9431 bp Feature: domain Description: Tra5 Location: 92 51-9431 bp Feature: gene Location: 10049-11326 bp Ori: KQM01952.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10265-10919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 65-10919 bp Feature: domain Description: GIIM Note: maturase Location: 11000-11222 bp Feature: domain Description: GIIM Note: maturase Location: 11000-112 2 2 bp Feature: gene Location: 11275-12039 bp Ori: KQM01953.1 Feature: domain Description: PHA02517 Location: 11317-11953 bp Feature: domain Description: PHA02 517 Location: 11317-11953 bp Feature: gene Location: 12144-12386 bp Ori: KQM01954.1 Feature: domain Description: InsE Location: 12147-12381 bp Feature: domain Description: InsE Location: 12 147-12 381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cas6 (pfam01881), RVT-GII, GIIM (pfam08388), Tra5 (COG2801), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)