myRT

myRT report for GCA_001421415.1_Leaf208

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Seq: LMKH01000006.1 Sphingomonas sp. Leaf208 contig_14, whole genome shotgun sequence (92896 bp)
Overview 1 RT 1: 71264-87075 bp Neighborhood of RT #1 [71264, 87083] PRiA4_ORF3 COG5635 COG5635 dnaG RVT-UG10 RVT-UG10 PRK09182 PRK09736 Feature: gene Location: 71264-71881 bp Ori: KQM54505.1 Feature: domain Description: PRiA4_ORF3 Location: 71282-71780 bp Feature: domain Description: PRiA4_ORF3 Location: 71 282-71 780 bp Feature: gene Location: 72212-76978 bp Ori: KQM54506.1 Feature: domain Description: COG5635 Location: 72890-73331 bp Feature: domain Description: COG5635 Location: 72890-73331 bp Feature: domain Description: COG5635 Location: 73901-74198 bp Feature: domain Description: COG5635 Location: 73901 -741 98 bp Feature: gene Location: 77665-85215 bp Ori: KQM54507.1 Feature: domain Description: dnaG Location: 77695-78862 bp Feature: domain Description: dnaG Location: 77695-78862 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 79504-79732 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 79504-79732 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 79912-80197 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 7991 2-801 97 bp Feature: gene Location: 85247-86137 bp Ori: KQM54508.1 Feature: domain Description: PRK09182 Location: 85259-86129 bp Feature: domain Description: PRK091 82 Location: 85259-861 29 bp Feature: gene Location: 86406-87083 bp Ori: KQM54509.1 Feature: domain Description: PRK09736 Location: 86418-87075 bp Feature: domain Description: PRK09736 Location: 8641 8-87075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRiA4_ORF3 (pfam07929), COG5635 (Predicted NTPase, NACHT family domain ), dnaG (TIGR01391), RVT-UG10, PRK09182 (DNA polymerase III subunit epsilon; Validated), PRK09736 (5-methylcytosine-specific restriction enzyme subunit McrC; Provisional)

Seq: LMKH01000010.1 Sphingomonas sp. Leaf208 contig_18, whole genome shotgun sequence (35544 bp)
Overview 1 RT 1: 30957-35072 bp Neighborhood of RT #1 [30957, 35335] SR_Res_par HTH_XRE RVT-Retrons TatD ExsB ExsB Feature: gene Location: 30957-31607 bp Ori: KQM53764.1 Feature: domain Description: SR_Res_par Location: 30966-31398 bp Feature: domain Description: SR_Res_par Location: 30966-31398 bp Feature: gene Location: 32253-32567 bp Ori: KQM53765.1 Feature: domain Description: HTH_XRE Location: 32280-32445 bp Feature: domain Description: HTH_XRE Location: 32 2 80-32 445 bp Feature: gene Location: 32605-33585 bp Ori: KQM53766.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32728-33232 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 72 8-332 32 bp Feature: gene Location: 33684-34442 bp Ori: KQM53767.1 Feature: domain Description: TatD Location: 33687-34395 bp Feature: domain Description: TatD Location: 33687-34395 bp Feature: gene Location: 34439-35335 bp Ori: KQM53768.1 Feature: domain Description: ExsB Location: 34472-34538 bp Feature: domain Description: ExsB Location: 34472 -34538 bp Feature: domain Description: ExsB Location: 34904-35072 bp Feature: domain Description: ExsB Location: 34904-35072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_Res_par (cd03767), HTH_XRE (smart00530), RVT-Retrons, TatD (COG0084), ExsB (cd01995)

Seq: LMKH01000034.1 Sphingomonas sp. Leaf208 contig_4, whole genome shotgun sequence (498466 bp)
Overview 1 RT 1: 460019-471407 bp Neighborhood of RT #1 [460019, 471407] Bac_GDH RVT-UG8 HTH_XRE Feature: gene Location: 460019-464635 bp Ori: KQM49302.1 Feature: domain Description: Bac_GDH Location: 460220-464597 bp Feature: domain Description: Bac_GDH Location: 460220-464597 bp Feature: gene Location: 464712-465878 bp Feature: gene Location: 466633-468129 bp Ori: KQM49304.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 466675-467122 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 466675-467122 bp Feature: gene Location: 470095-470292 bp Ori: KQM49305.1 Feature: domain Description: HTH_XRE Location: 470101-470254 bp Feature: domain Description: HTH_XRE Location: 470101-470254 bp Feature: gene Location: 471165-471407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_GDH (pfam05088), RVT-UG8, HTH_XRE (smart00530)