myRT

myRT report for GCA_001421515.1_Leaf216

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Seq: LMKM01000037.1 Pedobacter sp. Leaf216 contig_8, whole genome shotgun sequence (190115 bp)
Overview 1 RT 1: 59-5049 bp Neighborhood of RT #1 [59, 5049] RVT-UG2 Feature: gene Location: 59-463 bp Feature: gene Location: 521-1558 bp Feature: gene Location: 1704-3242 bp Ori: KQM64496.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1962-2889 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 962-2889 bp Feature: gene Location: 4008-4667 bp Feature: gene Location: 4858-5049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: LMKM01000023.1 Pedobacter sp. Leaf216 contig_3, whole genome shotgun sequence (611153 bp)
Overview 1 RT 1: 1399-7399 bp Neighborhood of RT #1 [1399, 7404] COG4185 VirD4 RVT_N RVT-GII GIIM DUF4138 Feature: gene Location: 1399-1806 bp Ori: KQM69204.1 Feature: domain Description: COG4185 Location: 1468-1693 bp Feature: domain Description: COG4185 Location: 1468-1693 bp Feature: gene Location: 1868-3220 bp Feature: domain Description: VirD4 Location: 1952-2798 bp Feature: domain Description: VirD4 Location: 1952 -2 798 bp Feature: gene Location: 3432-5099 bp Ori: KQM69205.1 Feature: domain Description: RVT_N Location: 3486-3729 bp Feature: domain Description: RVT_N Location: 3486-372 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3774-4425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3774-442 5 bp Feature: domain Description: GIIM Note: maturase Location: 4476-4713 bp Feature: domain Description: GIIM Note: maturase Location: 4476-4713 bp Feature: gene Location: 5790-6539 bp Feature: gene Location: 6568-7404 bp Ori: KQM69207.1 Feature: domain Description: DUF4138 Location: 6682-7399 bp Feature: domain Description: DUF4138 Location: 6682 -7399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4185 (Predicted ABC-type ATPase ), VirD4 (COG3505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4138 (pfam13595)

Seq: LMKM01000013.1 Pedobacter sp. Leaf216 contig_20, whole genome shotgun sequence (99308 bp)
Overview 1 RT 1: 91120-95490 bp Neighborhood of RT #1 [91120, 95612] RVT-UG28b VirE_N COG4849 Feature: gene Location: 91120-91332 bp Feature: gene Location: 91852-92157 bp Feature: gene Location: 92163-93563 bp Ori: KQM73073.1 Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 92553-93276 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 92553 -93 276 bp Feature: gene Location: 93729-94754 bp Ori: KQM73074.1 Feature: domain Description: VirE_N Location: 93912-94284 bp Feature: domain Description: VirE_N Location: 93 912-94284 bp Feature: gene Location: 94836-95612 bp Ori: KQM73075.1 Feature: domain Description: COG4849 Location: 94908-95490 bp Feature: domain Description: COG4849 Location: 94908-95490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28b, VirE_N (pfam08800), COG4849 (Predicted nucleotidyltransferase )

Seq: LMKM01000007.1 Pedobacter sp. Leaf216 contig_15, whole genome shotgun sequence (633475 bp)
Overview 1 RT 1: 119158-128452 bp Neighborhood of RT #1 [119158, 128571] SusD OMP_RagA_SusC RVT-GII GIIM SusD Feature: gene Location: 119158-121101 bp Ori: KQM77330.1 Feature: domain Description: SusD Location: 119515-120913 bp Feature: domain Description: SusD Location: 119515-120913 bp Feature: gene Location: 121185-124253 bp Ori: KQM77331.1 Feature: domain Description: OMP_RagA_SusC Location: 121188-124248 bp Feature: domain Description: OMP_RagA_SusC Location: 121188-124 24 8 bp Feature: gene Location: 125250-126509 bp Ori: KQM76970.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125454-126114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1254 54 -126114 bp Feature: domain Description: GIIM Note: maturase Location: 126198-126402 bp Feature: domain Description: GIIM Note: maturase Location: 126198-1264 02 bp Feature: gene Location: 126513-126722 bp Feature: gene Location: 127156-128571 bp Ori: KQM76972.1 Feature: domain Description: SusD Location: 127429-128452 bp Feature: domain Description: SusD Location: 1274 29-1284 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD (NF033071), OMP_RagA_SusC (TIGR04056), RVT-GII, GIIM (pfam08388)