myRT

myRT report for GCA_001422075.1_Leaf83

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Seq: LMMB01000014.1 Pseudomonas sp. Leaf83 contig_21, whole genome shotgun sequence (65134 bp)
Overview 1 RT 1: 43823-50870 bp Neighborhood of RT #1 [43823, 50923] dut PRK05579 RVT_N RVT-GII YkfC HNHc PRK00024 PBP2_DppA_like Feature: gene Location: 43823-44278 bp Feature: domain Description: dut Location: 43829-44273 bp Feature: domain Description: dut Location: 43829-44273 bp Feature: gene Location: 44281-45489 bp Feature: domain Description: PRK05579 Location: 44287-45481 bp Feature: domain Description: PRK05579 Location: 44287-45481 bp Feature: gene Location: 45699-47432 bp Feature: RT Description: RVT_N Location: 45759-46002 bp Feature: RT Description: RVT_N Location: 45759-46002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46050-46698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46050-46698 bp Feature: domain Description: YkfC Location: 46857-47034 bp Feature: domain Description: YkfC Location: 46857-47034 bp Feature: domain Description: HNHc Note: nucleases Location: 47235-47391 bp Feature: domain Description: HNHc Note: nucleases Location: 47235-47391 bp Feature: gene Location: 48557-49231 bp Feature: domain Description: PRK00024 Location: 48560-49229 bp Feature: domain Description: PRK00024 Location: 48560-49229 bp Feature: gene Location: 49346-50923 bp Feature: domain Description: PBP2_DppA_like Location: 49403-50870 bp Feature: domain Description: PBP2_DppA_like Location: 49403-50870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK00024 (DNA repair protein RadC), PBP2_DppA_like (cd08493)

Seq: LMMB01000036.1 Pseudomonas sp. Leaf83 contig_6, whole genome shotgun sequence (218840 bp)
Overview 1 RT 1: 20-6832 bp Neighborhood of RT #1 [20, 6849] DUF772 RVT-GII GIIM CHD CHD COG4271 Feature: gene Location: 20-661 bp Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 170-365 bp Feature: gene Location: 1050-2318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 63-192 0 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2 2 2 0 bp Feature: gene Location: 4313-5857 bp Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 452 9-4943 bp Feature: domain Description: CHD Location: 5171-5660 bp Feature: domain Description: CHD Location: 5171-5660 bp Feature: gene Location: 5938-6849 bp Feature: domain Description: COG4271 Location: 6163-6832 bp Feature: domain Description: COG42 71 Location: 6163-6832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), COG4271 (Predicted nucleotide-binding protein containing TIR -like domain )