myRT

myRT report for GCA_001422685.1_Leaf72

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Seq: LMLV01000001.1 Paenibacillus sp. Leaf72 contig_1, whole genome shotgun sequence (2170975 bp)
Overview 1 RT 1: 1212503-1217820 bp Neighborhood of RT #1 [1212503, 1217820] group_II_RT_mat RVT-GII Phage_integrase Feature: gene Location: 1212503-1212910 bp Feature: gene Location: 1214701-1215042 bp Ori: KQO18061.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1214704-1214983 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 21 4704-1 21 4983 bp Feature: gene Location: 1215308-1215976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1215563-1215977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 5563-1 21 5977 bp Feature: gene Location: 1216654-1216842 bp Ori: KQO18062.1 Feature: domain Description: Phage_integrase Location: 1216693-1216816 bp Feature: domain Description: Phage_integrase Location: 1 21 6693-1 21 681 6 bp Feature: gene Location: 1216981-1217820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, Phage_integrase (pfam00589)

Seq: LMLV01000031.1 Paenibacillus sp. Leaf72 contig_5, whole genome shotgun sequence (455654 bp)
Overview 1 RT 1: 139663-144237 bp Neighborhood of RT #1 [139663, 144254] DacC RVT-GII GIIM HTH_31 MLTR_LBD Nitroreductase_1 Feature: gene Location: 139663-139920 bp Feature: gene Location: 139917-141218 bp Ori: KQN99910.1 Feature: domain Description: DacC Location: 139941-141207 bp Feature: domain Description: DacC Location: 139941-1412 07 bp Feature: gene Location: 141707-142450 bp Ori: KQN99911.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141839-142094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141839-142 094 bp Feature: domain Description: GIIM Note: maturase Location: 142181-142376 bp Feature: domain Description: GIIM Note: maturase Location: 142 181-142 376 bp Feature: gene Location: 142511-143383 bp Ori: KQN99912.1 Feature: domain Description: HTH_31 Location: 142538-142781 bp Feature: domain Description: HTH_31 Location: 142 538-142 781 bp Feature: domain Description: MLTR_LBD Location: 142853-143327 bp Feature: domain Description: MLTR_LBD Location: 142 853-14332 7 bp Feature: gene Location: 143592-144254 bp Ori: KQN99913.1 Feature: domain Description: Nitroreductase_1 Location: 143637-144237 bp Feature: domain Description: Nitroreductase_1 Location: 143637-1442 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DacC (COG1686), RVT-GII, GIIM (pfam08388), HTH_31 (pfam13560), MLTR_LBD (pfam17765), Nitroreductase_1

Seq: LMLV01000017.1 Paenibacillus sp. Leaf72 contig_24, whole genome shotgun sequence (31901 bp)
Overview 1 RT 1: 8630-19058 bp Neighborhood of RT #1 [8630, 19099] Aes PAE RVT-GII GIIM RVT-GII Aes Aes PRK15098 BglX Feature: gene Location: 8630-9790 bp Ori: KQO05879.1 Feature: domain Description: Aes Location: 8987-9779 bp Feature: domain Description: Aes Location: 8987-9779 bp Feature: gene Location: 10248-11423 bp Ori: KQO05880.1 Feature: domain Description: PAE Location: 10491-10959 bp Feature: domain Description: PAE Location: 10491-10959 bp Feature: gene Location: 11533-12159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11572-11713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11572-11713 bp Feature: domain Description: GIIM Note: maturase Location: 11764-11974 bp Feature: domain Description: GIIM Note: maturase Location: 11764-11974 bp Feature: gene Location: 13969-14655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14164-14641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14164-14641 bp Feature: gene Location: 15630-16658 bp Ori: KQO05881.1 Feature: domain Description: Aes Location: 15723-16050 bp Feature: domain Description: Aes Location: 15723 -16050 bp Feature: domain Description: Aes Location: 16092-16269 bp Feature: domain Description: Aes Location: 16092-16269 bp Feature: gene Location: 16664-19099 bp Ori: KQO05890.1 Feature: domain Description: PRK15098 Location: 17060-17762 bp Feature: domain Description: PRK15098 Location: 17060-17762 bp Feature: domain Description: BglX Location: 18299-19058 bp Feature: domain Description: BglX Location: 18299-19058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Aes (COG0657), PAE (pfam03283), RVT-GII, GIIM (pfam08388), PRK15098 (beta-glucosidase BglX), BglX (COG1472)

Seq: LMLV01000005.1 Paenibacillus sp. Leaf72 contig_13, whole genome shotgun sequence (172331 bp)
Overview 1 RT 1: 43077-49667 bp Neighborhood of RT #1 [43077, 49669] PRK09276 PRK05755 RVT-GII RVT-GII RVT-GII GIIM IS285 IS285 Feature: gene Location: 43077-44312 bp Ori: KQO14672.1 Feature: domain Description: PRK09276 Location: 43101-44265 bp Feature: domain Description: PRK09276 Location: 4 3101-4 4 265 bp Feature: gene Location: 44395-45021 bp Feature: domain Description: PRK05755 Location: 44407-44980 bp Feature: domain Description: PRK05755 Location: 4 4 4 07-4 4 980 bp Feature: gene Location: 46281-46886 bp Ori: KQO14765.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46542-46863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 654 2-4 6863 bp Feature: gene Location: 46891-47244 bp Ori: KQO14673.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46894-47242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6894 -4 724 2 bp Feature: gene Location: 47271-47765 bp Ori: KQO14674.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47274-47484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 7274 -4 74 84 bp Feature: domain Description: GIIM Note: maturase Location: 47559-47754 bp Feature: domain Description: GIIM Note: maturase Location: 4 7559-4 7754 bp Feature: gene Location: 48392-48883 bp Feature: domain Description: IS285 Location: 48401-48884 bp Feature: domain Description: IS285 Location: 4 84 01-4 8884 bp Feature: gene Location: 48947-49669 bp Feature: domain Description: IS285 Location: 48986-49667 bp Feature: domain Description: IS285 Location: 4 8986-4 9667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09276 (LL-diaminopimelate aminotransferase; Provisional), PRK05755 (DNA polymerase I; Provisional), RVT-GII, GIIM (pfam08388), IS285 (COG3328)