myRT

myRT report for GCA_001423155.1_Leaf127

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Seq: LMOA01000023.1 Pseudomonas sp. Leaf127 contig_6, whole genome shotgun sequence (821127 bp)
Overview 1 RT 1: 122145-135322 bp Neighborhood of RT #1 [122145, 135322] Trypsin_2 pfam13191 ComEC ComEC RVT-UG5 Feature: gene Location: 122145-127952 bp Ori: KQQ53597.1 Feature: domain Description: Trypsin_2 Location: 122205-122607 bp Feature: domain Description: Trypsin_2 Location: 1 22205-1 22607 bp Feature: domain Description: pfam13191 Location: 122805-123216 bp Feature: domain Description: pfam1 31 91 Location: 1 22805-1 2321 6 bp Feature: gene Location: 127949-129130 bp Ori: KQQ53598.1 Feature: domain Description: ComEC Location: 127982-128165 bp Feature: domain Description: ComEC Location: 1 27982-1 281 65 bp Feature: domain Description: ComEC Location: 128696-128972 bp Feature: domain Description: ComEC Location: 1 28696-1 28972 bp Feature: gene Location: 129669-132668 bp Ori: KQQ53599.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 130140-130617 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 301 40-1 3061 7 bp Feature: gene Location: 133126-133692 bp Feature: gene Location: 134168-135322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trypsin_2 (pfam13365), pfam13191 (AAA_16;AAA ATPase domain), ComEC (COG2333), RVT-UG5

Seq: LMOA01000002.1 Pseudomonas sp. Leaf127 contig_10, whole genome shotgun sequence (174215 bp)
Overview 1 RT 1: 49880-56114 bp Neighborhood of RT #1 [49880, 56131] guaA TnpB_IS66 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C PRK13877 Feature: gene Location: 49880-51457 bp Ori: KQQ66416.1 Gene: guaA Feature: domain Description: guaA Location: 49898-51455 bp Feature: domain Description: guaA Location: 49898-51455 bp Feature: gene Location: 51959-52267 bp Ori: KQQ66417.1 Feature: domain Description: TnpB_IS66 Location: 51989-52142 bp Feature: domain Description: TnpB_IS66 Location: 51989-52 142 bp Feature: gene Location: 52674-53942 bp Ori: KQQ66418.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52878-53535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 878-53535 bp Feature: domain Description: GIIM Note: maturase Location: 53613-53835 bp Feature: domain Description: GIIM Note: maturase Location: 53613-53835 bp Feature: gene Location: 54198-55709 bp Ori: KQQ66419.1 Feature: domain Description: LZ_Tnp_IS66 Location: 54285-54495 bp Feature: domain Description: LZ_Tnp_IS66 Location: 542 85-54495 bp Feature: domain Description: zf-IS66 Location: 54525-54648 bp Feature: domain Description: zf-IS66 Location: 5452 5-54648 bp Feature: domain Description: DDE_Tnp_IS66 Location: 54693-55548 bp Feature: domain Description: DDE_Tnp_IS66 Location: 54693-55548 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 55569-55683 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 55569-55683 bp Feature: gene Location: 55742-56131 bp Ori: KQQ66420.1 Feature: domain Description: PRK13877 Location: 55871-56114 bp Feature: domain Description: PRK13877 Location: 55871-56114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT guaA (PRK00074), TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PRK13877 (conjugal transfer transcriptional regulator TraJ)