myRT

myRT report for GCA_001424345.1_Leaf1773

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Seq: LMPF01000001.1 Burkholderia sp. Leaf177 contig_1, whole genome shotgun sequence (823040 bp)
Overview 1 RT 1: 536-4746 bp Neighborhood of RT #1 [536, 4751] RVT-GII GIIM Big_6 PRK09285 Feature: gene Location: 536-1903 bp Ori: KQR89701.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872-1484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872-1 484 bp Feature: domain Description: GIIM Note: maturase Location: 1544-1739 bp Feature: domain Description: GIIM Note: maturase Location: 1 544-1 739 bp Feature: gene Location: 2371-3294 bp Ori: KQR89702.1 Feature: domain Description: Big_6 Location: 2443-2620 bp Feature: domain Description: Big_6 Location: 2443-2620 bp Feature: gene Location: 3363-4751 bp Ori: KQR89703.1 Feature: domain Description: PRK09285 Location: 3393-4746 bp Feature: domain Description: PRK09285 Location: 3393-4746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Big_6 (pfam17936), PRK09285 (adenylosuccinate lyase; Provisional)

Seq: LMPF01000021.1 Burkholderia sp. Leaf177 contig_4, whole genome shotgun sequence (783656 bp)
Overview 1 RT 1: 487015-494317 bp Neighborhood of RT #1 [487015, 494352] RVT-Retrons GATase1_AraC_1 TIGR03549 Feature: gene Location: 487015-487233 bp Feature: gene Location: 487966-489120 bp Feature: gene Location: 489427-490776 bp Ori: KQR78709.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 489892-490528 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 489892 -49052 8 bp Feature: gene Location: 491325-491711 bp Ori: KQR78710.1 Feature: domain Description: GATase1_AraC_1 Location: 491571-491691 bp Feature: domain Description: GATase1_AraC_1 Location: 491571-491691 bp Feature: gene Location: 492148-494352 bp Ori: KQR78711.1 Feature: domain Description: TIGR03549 Location: 492154-494317 bp Feature: domain Description: TIGR03549 Location: 492 154-494317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, GATase1_AraC_1 (cd03137), TIGR03549 (YcaO domain protein)

Seq: LMPF01000026.1 Burkholderia sp. Leaf177 contig_9, whole genome shotgun sequence (334684 bp)
Overview 1 RT 1: 209702-218009 bp Neighborhood of RT #1 [209702, 218017] IcdM RVT-UG7 BKR_like_SDR_like PRK14479 Feature: gene Location: 209702-211939 bp Ori: KQR73733.1 Feature: domain Description: IcdM Location: 209705-211931 bp Feature: domain Description: IcdM Location: 209705-21193 1 bp Feature: gene Location: 212369-213196 bp Feature: gene Location: 213362-214933 bp Ori: KQR73735.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 213776-214172 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 213 776-214172 bp Feature: gene Location: 215459-216250 bp Ori: KQR73736.1 Feature: domain Description: BKR_like_SDR_like Location: 215480-216242 bp Feature: domain Description: BKR_like_SDR_like Location: 215480-216242 bp Feature: gene Location: 216314-218017 bp Ori: KQR73851.1 Feature: domain Description: PRK14479 Location: 216317-218009 bp Feature: domain Description: PRK14479 Location: 2163 17-218009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IcdM (COG2838), RVT-UG7, BKR_like_SDR_like (cd05344), PRK14479 (dihydroxyacetone kinase; Provisional)