myRT

myRT report for GCA_001424925.1_Root329

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Seq: LMCV01000051.1 Pseudomonas sp. Root329 contig_9, whole genome shotgun sequence (161760 bp)
Overview 1 RT 1: 112-3710 bp Neighborhood of RT #1 [112, 3736] RVT-GII GIIM PhnB AcrR Feature: gene Location: 112-540 bp Feature: gene Location: 1060-2454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1387-2002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 387-2002 bp Feature: domain Description: GIIM Note: maturase Location: 2059-2275 bp Feature: domain Description: GIIM Note: maturase Location: 2059-2275 bp Feature: gene Location: 2543-2956 bp Feature: domain Description: PhnB Location: 2552-2951 bp Feature: domain Description: PhnB Location: 2552-2951 bp Feature: gene Location: 3140-3736 bp Feature: domain Description: AcrR Location: 3194-3710 bp Feature: domain Description: AcrR Location: 31 94-371 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AcrR (COG1309)

Seq: LMCV01000001.1 Pseudomonas sp. Root329 contig_1, whole genome shotgun sequence (634462 bp)
Overview 1 RT 1: 417167-423239 bp Neighborhood of RT #1 [417167, 423295] OprD PRX_1cys RVT-GII GIIM PRK10569 PBP2_SsuA Feature: gene Location: 417167-418549 bp Feature: domain Description: OprD Location: 417233-418541 bp Feature: domain Description: OprD Location: 4172 33-418541 bp Feature: gene Location: 418843-419481 bp Feature: domain Description: PRX_1cys Location: 418858-419464 bp Feature: domain Description: PRX_1cys Location: 418858-419464 bp Feature: gene Location: 420117-421409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420378-420990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 0378-42 0990 bp Feature: domain Description: GIIM Note: maturase Location: 421047-421260 bp Feature: domain Description: GIIM Note: maturase Location: 42 1047-42 12 60 bp Feature: gene Location: 421647-422240 bp Feature: domain Description: PRK10569 Location: 421650-422220 bp Feature: domain Description: PRK10569 Location: 42 1650-42 2 2 2 0 bp Feature: gene Location: 422330-423295 bp Feature: domain Description: PBP2_SsuA Location: 422420-423239 bp Feature: domain Description: PBP2 _SsuA Location: 42 2 42 0-42 32 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OprD (pfam03573), PRX_1cys (cd03016), RVT-GII, GIIM (pfam08388), PRK10569 (NAD(P)H-dependent FMN reductase; Provisional), PBP2_SsuA (cd13557)