myRT

myRT report for GCA_001425005.1_Root336D2

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Seq: LMDB01000010.1 Duganella sp. Root336D2 contig_18, whole genome shotgun sequence (55892 bp)
Overview 1 RT 1: 52787-54348 bp Neighborhood of RT #1 [52787, 54353] RVT-GII Feature: gene Location: 52787-53098 bp Feature: gene Location: 53175-53489 bp Feature: gene Location: 54081-54353 bp Ori: KQV54993.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54276-54348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54276-54348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LMDB01000012.1 Duganella sp. Root336D2 contig_2, whole genome shotgun sequence (1126261 bp)
Overview 1 RT 1: 989705-994973 bp Neighborhood of RT #1 [989705, 994984] PRK06814 RVT-Retrons PRK00124 PRK11675 Feature: gene Location: 989705-991591 bp Ori: KQV54461.1 Feature: domain Description: PRK06814 Location: 989723-991481 bp Feature: domain Description: PRK06814 Location: 98972 3-991481 bp Feature: gene Location: 991710-992429 bp Feature: gene Location: 992650-994026 bp Ori: KQV54463.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 993154-993793 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 993154-993793 bp Feature: gene Location: 994067-994525 bp Ori: KQV54464.1 Feature: domain Description: PRK00124 Location: 994070-994508 bp Feature: domain Description: PRK0012 4 Location: 994070-994508 bp Feature: gene Location: 994715-994984 bp Ori: KQV54465.1 Feature: domain Description: PRK11675 Location: 994814-994973 bp Feature: domain Description: PRK11675 Location: 994814-994973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06814 (acyl---phospholipid O-acyltransferase), RVT-Retrons, PRK00124 (YaiI/YqxD family protein), PRK11675 (LexA regulated protein; Provisional)

Seq: LMDB01000004.1 Duganella sp. Root336D2 contig_12, whole genome shotgun sequence (248720 bp)
Overview 1 RT 1: 112-4579 bp Neighborhood of RT #1 [112, 4581] RVT-UG17 Hypoth_Ymh PRK11798 Feature: gene Location: 112-330 bp Feature: gene Location: 1529-2296 bp Ori: KQV59162.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1532-1742 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 153 2-1742 bp Feature: gene Location: 2989-3801 bp Ori: KQV58958.1 Feature: domain Description: Hypoth_Ymh Location: 3412-3775 bp Feature: domain Description: Hypoth_Ymh Location: 3 412-3 775 bp Feature: gene Location: 4096-4581 bp Ori: KQV58959.1 Feature: domain Description: PRK11798 Location: 4102-4579 bp Feature: domain Description: PRK11798 Location: 4102-4579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, Hypoth_Ymh (pfam09509), PRK11798 (ClpXP protease specificity-enhancing factor; Provisional)

Seq: LMDB01000013.1 Duganella sp. Root336D2 contig_20, whole genome shotgun sequence (24493 bp)
Overview 1 RT 1: 115-5995 bp Neighborhood of RT #1 [115, 7035] RVT-Retrons SWIM WGR_DNA_ligase HEAT_2 HEAT_2 Feature: gene Location: 115-1986 bp Ori: KQV52581.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 676-1285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 676-1285 bp Feature: gene Location: 2294-3934 bp Ori: KQV52582.1 Feature: domain Description: SWIM Location: 3794-3908 bp Feature: domain Description: SWIM Location: 3794 -3908 bp Feature: gene Location: 3931-7035 bp Ori: KQV52583.1 Feature: domain Description: WGR_DNA_ligase Location: 3994-4180 bp Feature: domain Description: WGR_DNA_ligase Location: 3994 -4 180 bp Feature: domain Description: HEAT_2 Location: 4273-4534 bp Feature: domain Description: HEAT_2 Location: 4 273-4 534 bp Feature: domain Description: HEAT_2 Location: 5836-5995 bp Feature: domain Description: HEAT_2 Location: 5836-5995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SWIM (pfam04434), WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646)