myRT

myRT report for GCA_001425605.1_Leaf453

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Seq: LMRG01000005.1 Rhizobium sp. Leaf453 contig_13, whole genome shotgun sequence (190380 bp)
Overview 1 RT 1: 172652-178043 bp Neighborhood of RT #1 [172652, 178102] Trypsin_2 RVT-Retrons YhaK YcaC_related Feature: gene Location: 172652-173449 bp Ori: KQU08120.1 Feature: domain Description: Trypsin_2 Location: 172787-173273 bp Feature: domain Description: Trypsin_2 Location: 1 72787-1 73273 bp Feature: gene Location: 173620-174789 bp Feature: gene Location: 174984-176138 bp Ori: KQU08122.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 175254-175869 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 75254-1 75869 bp Feature: gene Location: 176706-177455 bp Ori: KQU08123.1 Feature: domain Description: YhaK Location: 176832-177429 bp Feature: domain Description: YhaK Location: 1 76832-1 77429 bp Feature: gene Location: 177527-178102 bp Ori: KQU08124.1 Feature: domain Description: YcaC_related Location: 177563-178043 bp Feature: domain Description: YcaC_related Location: 1 77563-1 78043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trypsin_2 (pfam13365), RVT-Retrons, YhaK (COG1741), YcaC_related (cd01012)

Seq: LMRG01000023.1 Rhizobium sp. Leaf453 contig_3, whole genome shotgun sequence (716188 bp)
Overview 1 RT 1: 44389-49981 bp Neighborhood of RT #1 [44389, 49992] INT_C_like_1 RVT-UNC InsE PHA02517 Feature: gene Location: 44389-45108 bp Feature: gene Location: 45336-46976 bp Ori: KQT96988.1 Feature: domain Description: INT_C_like_1 Location: 46362-46884 bp Feature: domain Description: INT_C_like_1 Location: 46362 -46884 bp Feature: gene Location: 47298-48839 bp Ori: KQT96989.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 47844-48402 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 47844-48402 bp Feature: gene Location: 48896-49135 bp Ori: KQT96990.1 Feature: domain Description: InsE Location: 48935-49127 bp Feature: domain Description: InsE Location: 48935-4912 7 bp Feature: gene Location: 49132-49992 bp Ori: KQT96991.1 Feature: domain Description: PHA02517 Location: 49198-49981 bp Feature: domain Description: PHA02 517 Location: 49198-49981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_C_like_1 (cd01184), RVT-UG27/RVT-GII(RVT-UNC), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)